PXD003907 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Human Fecal Gut Microbiome proteomics |
Description | 5 human fecal gut samples, collected and prepared for standard MudPIT data collection from healthy volunteers, searched with the ComPIL database. x3 replicates each |
HostingRepository | PRIDE |
AnnounceDate | 2016-08-04 |
AnnouncementXML | Submission_2017-04-20_23:58:56.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Greg Stupp |
SpeciesList | scientific name: human metagenome; NCBI TaxID: 646099; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-04-05 02:55:39 | ID requested | |
1 | 2016-08-03 16:14:57 | announced | |
⏵ 2 | 2017-04-20 23:58:59 | announced | Updated publication reference for PubMed record(s): 27528457. |
Publication List
Chatterjee S, Stupp GS, Park SK, Ducom JC, Yates JR, Su AI, Wolan DW, A comprehensive and scalable database search system for metaproteomics. BMC Genomics, 17(1):642(2016) [pubmed] |
Keyword List
curator keyword: Metaproteomics, Biological, Biomedical |
submitter keyword: microbiome fecal gut bacteria colon |
Contact List
Dennis Wolan |
contact affiliation | Assistant Professor Department of Molecular and Experimental Medicine TSRI - California Campus USA |
contact email | wolan@scripps.edu |
lab head | |
Greg Stupp |
contact affiliation | TSRI |
contact email | gstupp@scripps.edu |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/08/PXD003907 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD003907
- Label: PRIDE project
- Name: Human Fecal Gut Microbiome proteomics