PXD003669 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Identification of type strain-specific diagnostic peptides of the Bacillus cereus group |
Description | The Bacillus cereus group consists of eight very closely related species and comprises both harmless and human pathogenic species. Yet, methods to rapidly and accurately distinguish these species are currently lacking as we demonstrate that classical matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) biotyping did not achieve reliable identification of each type strain. We assigned type strain-specific diagnostic peptides to the B. cereus group based on comparisons of their proteome profiles. The number of diagnostic peptides varies remarkably in type strain-dependent manner. The state of the art of the reference database is crucial in the process of validating candidate diagnostic peptides and may lead to a noteworthy reduction of verified diagnostic peptides as putative diagnostic peptides might be found in other species as well. |
HostingRepository | PRIDE |
AnnounceDate | 2018-02-07 |
AnnouncementXML | Submission_2018-02-07_06:33:13.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD003669 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | David Drissner |
SpeciesList | scientific name: Bacillus weihenstephanensis NBRC 101238 = DSM 11821; NCBI TaxID: 1220585; scientific name: Bacillus cereus (strain ATCC 14579 / DSM 31); NCBI TaxID: 226900; scientific name: Bacillus mycoides DSM 2048; NCBI TaxID: 526997; scientific name: Bacillus thuringiensis serovar berliner ATCC 10792; NCBI TaxID: 527031; scientific name: Bacillus toyonensis BCT-7112; NCBI TaxID: 1415784; scientific name: Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 / NVH 391-98); NCBI TaxID: 315749; scientific name: Bacillus pseudomycoides DSM 12442; NCBI TaxID: 527000; |
ModificationList | Deamidated; Oxidation |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-02-22 00:27:58 | ID requested | |
⏵ 1 | 2018-02-07 06:33:14 | announced | |
2 | 2019-02-12 08:04:42 | announced | Updated publication reference for PubMed record(s): 27432653. |
Publication List
Dataset with its publication pending |
Keyword List
curator keyword: Biomedical |
submitter keyword: Bacillus cereus group, type strains, diagnostic peptides, LC-MS/MS |
Contact List
David Drissner |
contact affiliation | Agroscope Institute for Food Sciences Schloss 1 8820 Waedenswil Switzerland |
contact email | david.drissner@agroscope.admin.ch |
lab head | |
David Drissner |
contact affiliation | Agroscope, Institute for Food Sciences, 8820 Waedenswil, Switzerland |
contact email | david.drissner@agroscope.admin.ch |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD003669
- Label: PRIDE project
- Name: Identification of type strain-specific diagnostic peptides of the Bacillus cereus group