PXD003588 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Nano Random Forests to mine proteomics data for protein complexes and their relationships in quantitative proteomics data |
Description | This project has integrated SILAC proteomics data of wild type and knockout mitotic chromosomes, and used machine learning technique random forests to identify chromosomal complexes with high precision, and small training sets. |
HostingRepository | PRIDE |
AnnounceDate | 2018-10-26 |
AnnouncementXML | Submission_2018-10-26_02:11:47.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Luis Montano |
SpeciesList | scientific name: Gallus gallus (Chicken); NCBI TaxID: 9031; |
ModificationList | No PTMs are included in the dataset |
Instrument | LTQ Orbitrap |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2016-02-08 05:27:03 | ID requested | |
⏵ 1 | 2018-10-26 02:11:49 | announced | |
Publication List
Monta, ñ, o-Gutierrez LF, Ohta S, Kustatscher G, Earnshaw WC, Rappsilber J, Nano Random Forests to mine protein complexes and their relationships in quantitative proteomics data. Mol Biol Cell, 28(5):673-680(2017) [pubmed] |
Keyword List
curator keyword: Technical |
submitter keyword: Machine learning, SILAC, mitotic chromosomes, chicken, SMC, kinetochore |
Contact List
Juri Rappsilber |
contact affiliation | University of Edinburgh |
contact email | Juri.Rappsilber@ed.ac.uk |
lab head | |
Luis Montano |
contact affiliation | University of Edinburgh |
contact email | nando.mgu@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD003588 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD003588
- Label: PRIDE project
- Name: Nano Random Forests to mine proteomics data for protein complexes and their relationships in quantitative proteomics data