PXD003309-2

PXD003309 is an original dataset announced via ProteomeXchange.

Title	Systems-wide analysis of manganese deficiency-induced changes in gene activity of Arabidopsis roots
Description	In this study, we undertook a comprehensive quantitative proteomic profiling of Arabidopsis roots from plants grown on Mn-deplete media, aiming at dissecting and cataloging the responses of Arabidopsis roots to Mn deficiency. We used LC-Q Exactive Orbitrap mass spectrometer to compile a near complete inventory of the Arabidopsis root proteome. We identified several novel components of cellular Mn homeostasis and show that many putatively important changes in response to Mn deficiency are only evident at one of the omics levels under investigation.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:27:04.054.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Tuan-Nan Wen
SpeciesList	scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationList	iTRAQ4plex-116 reporter+balance reagent acylated residue; iodoacetamide derivatized residue
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2015-12-09 01:50:53	ID requested
1	2018-10-26 03:05:01	announced
⏵ 2	2024-10-22 04:27:10	announced	2024-10-22: Updated project metadata.

10.1038/srep35846;

Rodr, í, guez-Celma J, Tsai YH, Wen TN, Wu YC, Curie C, Schmidt W, Systems-wide analysis of manganese deficiency-induced changes in gene activity of Arabidopsis roots. Sci Rep, 6():35846(2016) [pubmed]

curator keyword: Biological

submitter keyword: proteomics, manganese deficiency, systems biology, transcriptomics, post-transcriptional regulation

Wolfgang Schmidt
contact affiliation	Institute of Plant and Microbial Biology, Academia Sinica, Taiwan
contact email	wosh@gate.sinica.edu.tw
lab head
Tuan-Nan Wen
contact affiliation	Institute of Plant and Microbial Biology, Academia Sinica, Taiwan
contact email	tnwen@sinica.edu.tw
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/10/PXD003309

PRIDE project URI

• PRIDE
  1. PXD003309
     1. Label: PRIDE project
     2. Name: Systems-wide analysis of manganese deficiency-induced changes in gene activity of Arabidopsis roots