PXD002667-1

PXD002667 is an original dataset announced via ProteomeXchange.

Title	Geobacter sulfurreducens biofilm iTRAQ analysis
Description	Geobacter sulfurreducens is a dissimilatory metal-reducing bacterium capable of forming thick electron-conducting biofilms on solid electrodes in the absence of alternative electron acceptors. The remarkable ability of such biofilms to transfer electrons, liberated from soluble organic electron donors, over long distances has attracted scientific interest as to the mechanism for this process, and technological interest for application to microbial fuel and electrolysis cells and sensors. Here, we employ comparative proteomics to identify key metabolic pathways involved in G. sulfurreducens respiration by planktonic cells versus electron-conducting biofilms, in an effort to elucidate long-range electron transfer mechanisms.
HostingRepository	PRIDE
AnnounceDate	2018-02-16
AnnouncementXML	Submission_2018-02-16_02:30:25.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Catherine Botting
SpeciesList	scientific name: Geobacter sulfurreducens; NCBI TaxID: 35554;
ModificationList	methylthiolated residue; iTRAQ8plex-116 reporter+balance reagent acylated residue
Instrument	TripleTOF 5600

Revision	Datetime	Status	ChangeLog Entry
0	2015-08-05 02:28:55	ID requested
⏵ 1	2018-02-16 02:30:26	announced
2	2024-10-22 03:59:13	announced	2024-10-22: Updated project metadata.

Kavanagh P, Botting CH, Jana PS, Leech D, Abram F, Comparative proteomics implicates a role for multiple secretion systems in electrode-respiring Geobacter sulfurreducens biofilms. J Proteome Res, 15(12):4135-4145(2016) [pubmed]

curator keyword: Biological

submitter keyword: Geobacter sulfurreducens, iTRAQ, 5600

Catherine Helen Botting
contact affiliation	BSRC Mass Spectrometry and Proteomics Facility Biomedical Sciences Research Complex BMS Annexe, North Haugh University of St Andrews St Andrews, Fife KY16 9ST
contact email	cb2@st-andrews.ac.uk
lab head
Catherine Botting
contact affiliation	Biomedical Science Research Complex
contact email	cb2@st-andrews.ac.uk
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2018/02/PXD002667

PRIDE project URI

• PRIDE
  1. PXD002667
     1. Label: PRIDE project
     2. Name: Geobacter sulfurreducens biofilm iTRAQ analysis