PXD002472 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic study of S erythrea bioprocess |
Description | Proteome composition of Saccharopolyspora erythrea during the fermentation bioprocess was studied. Samples were collected at two timepoints (prior to the rapid growth phase and at the start of the rapid growth phase), and relative differences in protein abundance were determined by spectral counting. |
HostingRepository | PRIDE |
AnnounceDate | 2016-05-26 |
AnnouncementXML | Submission_2016-06-08_01:03:48.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Marko Fonovic |
SpeciesList | scientific name: Saccharopolyspora erythraea (Streptomyces erythraeus); NCBI TaxID: 1836; |
ModificationList | monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2015-07-03 03:10:34 | ID requested | |
1 | 2016-05-26 09:30:35 | announced | |
⏵ 2 | 2016-06-08 01:03:49 | announced | Updated publication reference for PubMed record(s): 27255285. |
3 | 2017-06-20 05:43:24 | announced | Updated project metadata. |
4 | 2017-10-24 05:53:02 | announced | Updated project metadata. |
Publication List
Karni, č, ar K, Drobnak I, Petek M, Magdevska V, Horvat J, Vidmar R, Baebler Š, Rotter A, Jamnik P, Fujs Š, Turk B, Fonovi, č M, Gruden K, Kosec G, Petkovi, ć H, Integrated omics approaches provide strategies for rapid erythromycin yield increase in Saccharopolyspora erythraea. Microb Cell Fact, 15():93(2016) [pubmed] |
Keyword List
curator keyword: Biological |
submitter keyword: Saccharopolyspora erythrea, bioprocess, LC-MS/MS |
Contact List
Marko Fonovic |
contact affiliation | Department of Biochemistry, Molecular and Structural Biology, Jozef Stefan Institute, Ljubljana, Slovenia |
contact email | marko.fonovic@ijs.si |
lab head | |
Marko Fonovic |
contact affiliation | Jozef Stefan Institute |
contact email | marko.fonovic@ijs.si |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/05/PXD002472 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD002472
- Label: PRIDE project
- Name: Proteomic study of S erythrea bioprocess