PXD001399-1

PXD001399 is an original dataset announced via ProteomeXchange.

Title	Protein Quantification and Identification from River Bank Grape, Vitis riparia: Comparing SDS-PAGE and FASP-GPF techniques for shotgun proteomic analysis.
Description	The aim of this quantitative label-free shotgun proteomic experiment is to perform a comparative study of two different sample preparation methods which employ two different pre-fractionation techniques (SDS-PAGE and FASP-GPF) for use in shotgun proteomic analysis of Vitis riparia leaf material with concurrent label-free quantitation in order to optimise a technique that would facilitate identification of most number of proteins and produce useful biological information, when searched against the Vitis vinifera database.
HostingRepository	PRIDE
AnnounceDate	2015-05-27
AnnouncementXML	Submission_2015-05-27_01:07:46.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Iniga George
SpeciesList	scientific name: Vitis labrusca x Vitis riparia; NCBI TaxID: 651388; scientific name: Vitis vinifera (Grape); NCBI TaxID: 29760;
ModificationList	monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos

Revision	Datetime	Status	ChangeLog Entry
0	2014-10-15 01:21:13	ID requested
⏵ 1	2015-05-27 01:07:48	announced
2	2018-04-16 01:38:43	announced	Updated publication reference for PubMed record(s): 25929842.
3	2024-10-22 03:58:50	announced	2024-10-22: Updated project metadata.

George IS, Fennell AY, Haynes PA, Protein identification and quantification from riverbank grape, Vitis riparia: Comparing SDS-PAGE and FASP-GPF techniques for shotgun proteomic analysis. Proteomics, 15(17):3061-5(2015) [pubmed]

curator keyword: Technical

submitter keyword: Grapevine, FASP, SDS-PAGE

Paul A Haynes
contact affiliation	Department of Chemistry & Biomolecular Sciences, Macquarie University, NSW 2109
contact email	paul.haynes@mq.edu.au
lab head
Iniga George
contact affiliation	Macquarie University
contact email	iniga.george@gmail.com
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2015/05/PXD001399

PRIDE project URI

• PRIDE
  1. PXD001399
     1. Label: PRIDE project
     2. Name: Protein Quantification and Identification from River Bank Grape, Vitis riparia: Comparing SDS-PAGE and FASP-GPF techniques for shotgun proteomic analysis.