PXD001128-1

PXD001128 is an original dataset announced via ProteomeXchange.

Title	Integrating transcriptomics and proteomics data for accurate assembly and annotation of genomes
Description	Deep proteomic analysis of larvae, pupae and 15 adult tissues using high resolution Fourier transform mass spectrometry provided peptide evidence for ~9,000 computationally predicted genes accounting for 82% of total protein-coding genes in An. stephensi. Transcriptomic profiling of 4 tissues provided transcript evidence for 7,504 computationally predicted gene models and resulted in identification of 3,797 novel transcripts. We also identified protein level evidence for several novel alternative transcripts, SNPs and tissue restricted expression patterns of several proteins in An. stephensi
HostingRepository	PRIDE
AnnounceDate	2016-09-27
AnnouncementXML	Submission_2016-09-26_16:13:35.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Akhilesh Pandey
SpeciesList	scientific name: Anopheles stephensi (Asian malaria mosquito); NCBI TaxID: 30069;
ModificationList	acetylated residue
Instrument	LTQ Orbitrap Velos; Q Exactive; LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2014-07-11 01:21:48	ID requested
⏵ 1	2016-09-26 16:13:36	announced
2	2024-10-22 04:05:23	announced	2024-10-22: Updated project metadata.

Dataset with its publication pending

curator keyword: Biological, Biomedical

submitter keyword: Anopheles stephensi, LTQ Orbitrap Elite, LTQ Orbitrap Velos, Q Exactive, Antennae, Proboscis, Maxillary palps, Brain, Head, Salivary glands, Thorax, Legs, Hemolymph, Fat body, Midgut, Malpighian tubules, Ovary, Testis, Male accessory glands, Larvae, Pupae

Akhilesh Pandey
contact affiliation	Johns Hopkins University School of Medicine, Baltimore
contact email	pandey@jhmi.edu
lab head
Akhilesh Pandey
contact affiliation	Johns Hopkins University
contact email	pandey@jhmi.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/09/PXD001128

PRIDE project URI

• PRIDE
  1. PXD001128
     1. Label: PRIDE project
     2. Name: Integrating transcriptomics and proteomics data for accurate assembly and annotation of genomes