PXD000865-4

PXD000865 is an original dataset announced via ProteomeXchange.

Title	Mass spectrometry based draft of the human proteome
Description	This PXD project contains two projects published on ProteomicsDB (https://www.proteomicsDB.org) as integral part of the publication. The first project entitled 'human body map' (https://www.proteomicsdb.org/#projects/42) involves the analysis of 36 different human tissues and body fluids. The second project entitled 'Cellzome adopted' includes a collection of raw files which comprises identifications of 'missing proteins'.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:20:11.976.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Hannes Hahne
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrument	LTQ Orbitrap Velos; LTQ Orbitrap Elite

Revision	Datetime	Status	ChangeLog Entry
0	2014-03-28 09:36:54	ID requested
1	2014-05-28 11:25:24	announced
2	2014-05-30 02:03:57	announced	Updated publication reference for PubMed record(s): 24870543.
3	2014-07-24 03:57:19	announced	Updated project metadata.
⏵ 4	2024-10-22 04:20:15	announced	2024-10-22: Updated project metadata.

10.1038/nature13319;

Wilhelm M, Schlegl J, Hahne H, Gholami AM, Lieberenz M, Savitski MM, Ziegler E, Butzmann L, Gessulat S, Marx H, Mathieson T, Lemeer S, Schnatbaum K, Reimer U, Wenschuh H, Mollenhauer M, Slotta-Huspenina J, Boese JH, Bantscheff M, Gerstmair A, Faerber F, Kuster B, Mass-spectrometry-based draft of the human proteome. Nature, 509(7502):582-7(2014) [pubmed]

ProteomeXchange project tag: deep learning, benchmarking, tissue proteome, machine learning

curator keyword: Biomedical

submitter keyword: human proteome,Human body map, missing proteins

Bernhard Kuster
contact affiliation	Technische Universitaet Muenchen Chair of Proteomics and Bioanalytics
contact email	kuster@tum.de
lab head
Hannes Hahne
contact affiliation	Chair of Proteomics and Bioanalytics
contact email	hannes.hahne@tum.de
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2014/05/PXD000865

PRIDE project URI

• PRIDE
  1. PXD000865
     1. Label: PRIDE project
     2. Name: Mass spectrometry based draft of the human proteome