PXD000815-3

PXD000815 is an original dataset announced via ProteomeXchange.

Title	Breast cancer tumors - System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis
Description	The project analyzed 88 breast cancer clinical samples, including lymph node negative and positive primary tumors, lymph node metastases, and healthy tissue as control. All samples were combined with a super-SILAC mix that served as an internal standard for quantification.
HostingRepository	PRIDE
AnnounceDate	2024-10-22
AnnouncementXML	Submission_2024-10-22_04:24:30.869.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Tamar Geiger
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive

Revision	Datetime	Status	ChangeLog Entry
0	2014-03-12 03:22:14	ID requested
1	2016-01-25 14:59:42	announced
2	2016-05-03 00:59:17	announced	Updated publication reference for PubMed record(s): 27135363.
⏵ 3	2024-10-22 04:24:35	announced	2024-10-22: Updated project metadata.

Pozniak Y, Balint-Lahat N, Rudolph JD, Lindskog C, Katzir R, Avivi C, Pont, é, n F, Ruppin E, Barshack I, Geiger T, System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis. Cell Syst, 2(3):172-84(2016) [pubmed]

10.1016/j.cels.2016.02.001;

ProteomeXchange project tag: deep learning, benchmarking, machine learning, immunopeptidomics

curator keyword: Biomedical

submitter keyword: ER positive, lymph node negative,breast cance, luminal, lymph node positive

Tamar Geiger
contact affiliation	Department of human molecular genetics and biochemistry, Sackler faculty of medicine, Tel Aviv University, Tel Aviv, Israel
contact email	geiger@tauex.tau.ac.il
lab head
Tamar Geiger
contact affiliation	Weizmann Institute of Science
contact email	geiger@tauex.tau.ac.il
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2016/01/PXD000815

PRIDE project URI

• PRIDE
  1. PXD000815
     1. Label: PRIDE project
     2. Name: Breast cancer tumors - System-wide Clinical Proteomics of Breast Cancer Reveals Global Remodeling of Tissue Homeostasis