PXD000449-4
PXD000449 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. CCD18 Cell line. |
| Description | The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study four human cell lines were selected, MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the CCD18 cell line. 6 laboratories contributed to compile all the reported data. |
| HostingRepository | PRIDE |
| AnnounceDate | 2024-10-07 |
| AnnouncementXML | Submission_2024-10-07_09:07:03.686.xml |
| DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD000449 |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | J. Alberto Medina-Aunon |
| SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
| ModificationList | deaminated residue; acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue |
| Instrument | LTQ Orbitrap Velos; TripleTOF 5600; Q Exactive; LTQ Orbitrap |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2013-09-04 05:41:03 | ID requested | |
| 1 | 2013-09-06 01:25:32 | announced | |
| 1 | 2013-11-22 01:25:04 | announced | |
| 2 | 2024-10-07 09:06:41 | announced | 2024-10-07: Updated project metadata. |
| 3 | 2024-10-07 09:06:55 | announced | 2024-10-07: Updated project metadata. |
| ⏵ 4 | 2024-10-07 09:07:04 | announced | 2024-10-07: Updated project metadata. |
| 5 | 2024-10-07 09:07:13 | announced | 2024-10-07: Updated project metadata. |
Publication List
| 10.6019/PXD000449; |
| 10.1021/pr400721r; |
| Segura V, Medina-Aunon JA, Mora MI, Mart, í, nez-Bartolom, é S, Abian J, Aloria K, Ant, ú, nez O, Arizmendi JM, Azkargorta M, Barcel, ó, -Batllori S, Beaskoetxea J, Bech-Serra JJ, Blanco F, Monteiro MB, C, á, ceres D, Canals F, Carrascal M, Casal JI, Clemente F, Colom, é N, Dasilva N, D, í, az P, Elortza F, Fern, á, ndez-Puente P, Fuentes M, Gallardo O, Gharbi SI, Gil C, Gonz, á, lez-Tejedo C, Hern, á, ez ML, Lombard, í, a M, Lopez-Lucendo M, Marcilla M, Mato JM, Mendes M, Oliveira E, Orera I, Pascual-Montano A, Prieto G, Ruiz-Romero C, S, á, nchez del Pino MM, Tabas-Madrid D, Valero ML, Vialas V, Villanueva J, Albar JP, Corrales FJ, Surfing transcriptomic landscapes. A step beyond the annotation of chromosome 16 proteome. J Proteome Res, 13(1):158-72(2014) [pubmed] |
Keyword List
| ProteomeXchange project tag: Chromosome-centric Human Proteome Project (C-HPP), Human Proteome Project |
| submitter keyword: Chromosome centric,Networking,MIAPE,HPP |
Contact List
| J. Alberto Medina-Aunon | |
|---|---|
| contact affiliation | Proteomics - Bioinformatics |
| contact email | jamedina@proteored.org |
| lab head | |
| J. Alberto Medina-Aunon | |
| contact affiliation | Proteomics - Bioinformatics |
| contact email | jamedina@proteored.org |
| dataset submitter | |
Full Dataset Link List
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2013/09/PXD000449 |
| PRIDE project URI |
Repository Record List
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