PXD000447-1

PXD000447 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. Ramos Cell line.
Description	The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study four human cell lines were selected, MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the Ramos cell line. 3 laboratories contributed to compile all the reported data.
HostingRepository	PRIDE
AnnounceDate	2013-09-05
AnnouncementXML	Submission_2013-09-05_07:47:41.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000447
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Alberto Medina-Aunon
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	fragment neutral loss: 0.0; monohydroxylated residue; deaminated residue; iodoacetamide derivatized residue; fragment neutral loss: 63.998285
Instrument	collision gas; collision gas

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2013-09-03 12:18:36	ID requested
⏵ 1	2013-09-05 07:47:41	announced
⏵ 1	2013-11-20 05:10:54	announced
2	2024-10-07 09:06:23	announced	2024-10-07: Updated project metadata.
3	2024-10-07 09:06:36	announced	2024-10-07: Updated project metadata.

Publication List

Dataset with its publication pending

Dataset with its publication pending

Keyword List

submitter keyword: HPP,MIAPE,Networking,Chromosome centric

submitter keyword: HPP,MIAPE,Networking,Chromosome centric

Contact List

Mikel Azkargorta
contact attribute	Department:Proteomics Platform Position:lab personnel Address:Servicio Proteómica CIC bioGUNE. Parque Tecnológico de Bizkaia. Edif. 800 48160 DERIO- BIZKAIA e-mail:mazkargorta@cicbiogune.es Telephone:94 406 1329
contact affiliation	CIC bioGUNE
contact email	mazkargorta@cicbiogune.es
Alberto Medina-Aunon
contact affiliation	Centro Nacional de Biotecnologia, CSIC, Madrid, Spain.
contact email	jamedina@cnb.csic.es
Marta Mendes
contact attribute	Department:Medicina Molecular - Proteomica Funcional Position:researcher Address:Ramiro de Maeztu, 9 28040 Madrid e-mail:m.mendes@cib.csic.es Telephone:+34 91 837 31 12 ext 4364
contact affiliation	CIB
contact email	m.mendes@cib.csic.es
Eliandre De Oliveira
contact attribute	Department:Proteomics Platform Position:researcher Address:Plataforma de Proteòmica PCB - Edifici Clúster Baldiri Reixac, 10 08028 Barcelona Tel 93 403 46 53 Fax 93 403 72 06 pproteomica@pcb.ub.es http://www.pcb.ub.cat/plataforma/proteomica e-mail:eoliveira@pcb.ub.es Telephone:934037206
contact affiliation	PCB
contact email	pproteomica@pcb.ub.es

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/09/PXD000447

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/09/PXD000447

Repository Record List

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