PXD000442 is an
original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Chr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. MCF7 Cell line. |
| Description | The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study four human cell lines were selected, MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the MCF7 cell line. 6 laboratories contributed to compile all the reported data. |
| HostingRepository | PRIDE |
| AnnounceDate | 2013-09-05 |
| AnnouncementXML | Submission_2013-09-04_20:00:23.xml |
| DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD000442 |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Alberto Medina-Aunon |
| SpeciesList | scientific name: Homo Sapiens; NCBI TaxID: 9606; scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
| ModificationList | iodoacetamide derivatized residue; fragment neutral loss: 0.0; monohydroxylated residue; fragment neutral loss: 63.998285; deaminated residue; acetylated residue |
| Instrument | dissociation method; dissociation method; collision gas; collision gas; dissociation method |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|
| 0 | 2013-09-02 07:27:14 | ID requested | |
| ⏵ 1 | 2013-09-04 20:00:23 | announced | |
| ⏵ 1 | 2013-11-19 10:09:18 | announced | |
| 2 | 2017-06-21 00:30:41 | announced | Updated project metadata. |
| 3 | 2017-10-24 00:13:17 | announced | Updated project metadata. |
| 4 | 2024-10-07 09:05:00 | announced | 2024-10-07: Updated project metadata. |
| 5 | 2024-10-07 09:05:11 | announced | 2024-10-07: Updated project metadata. |
| 6 | 2024-10-07 09:05:28 | announced | 2024-10-07: Updated project metadata. |
| 7 | 2024-10-07 09:05:41 | announced | 2024-10-07: Updated project metadata. |
Publication List
| Dataset with its publication pending |
Keyword List
| submitter keyword: HPP,MIAPE,Networking,Chromosome centric |
Contact List
| Carmen Gonzalez |
|---|
| contact attribute | Department:Proteomics Unit Position:researcher e-mail:cgonzalez@cnb.csic.es |
| contact affiliation | CNB-CSIC |
| contact email | cgonzalez@cnb.csic.es |
| Mikel Azkargorta |
|---|
| contact attribute | Department:Proteomics Platform Position:lab personnel Address:Servicio Proteómica CIC bioGUNE. Parque Tecnológico de Bizkaia. Edif. 800 48160 DERIO- BIZKAIA e-mail:mazkargorta@cicbiogune.es Telephone:94 406 1329 |
| contact affiliation | CIC bioGUNE |
| contact email | mazkargorta@cicbiogune.es |
| Alberto Medina-Aunon |
|---|
| contact affiliation | Centro Nacional de Biotecnologia, CSIC, Madrid, Spain. |
| contact email | jamedina@cnb.csic.es |
| Joan Villanueva |
|---|
| contact attribute | Department:LP-CSIC/UAB Position:lab personnel Address:Facultat de Medicina Edifici M2, Despatx M2-002.A Universitat Autònoma de Barcelona 08193 Barcelona (Catalunya, España) e-mail:joavilrib@gmail.com Telephone:935814912 |
| contact affiliation | IIBB |
| contact email | joavilrib@gmail.com |
| Marta Mendes |
|---|
| contact attribute | Department:Medicina Molecular - Proteomica Funcional Position:researcher Address:Ramiro de Maeztu, 9 28040 Madrid e-mail:m.mendes@cib.csic.es Telephone:+34 91 837 31 12 ext 4364 |
| contact affiliation | Centro de Investigaciones Biologicas |
| contact email | m.mendes@cib.csic.es |
| Joan Josep Bech |
|---|
| contact attribute | Department:Laboratori de Proteòmica Position:researcher Address:Psg. Vall Hebron, 119-129 Vall Hebron Institut de Recerca (VHIR). Edifici Collserola 08035 Barcelona e-mail:jjbech@vhio.net Telephone:934894174 |
| contact affiliation | Vall Hebron Institute of Oncology (VHIO) |
| contact email | jjbech@vhio.net |
| Eliandre De Oliveira |
|---|
| contact attribute | Department:Proteomics Platform Position:researcher Address:Plataforma de Proteòmica PCB - Edifici Clúster Baldiri Reixac, 10 08028 Barcelona Tel 93 403 46 53 Fax 93 403 72 06 pproteomica@pcb.ub.es http://www.pcb.ub.cat/plataforma/proteomica e-mail:eoliveira@pcb.ub.es Telephone:934037206 |
| contact affiliation | PCB |
| contact email | pproteomica@pcb.ub.es |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/09/PXD000442 |
Repository Record List
[ + ]
[ - ]
- PRIDE
- 31014
- InstrumentRef: INSTRUMENT_4
- Label: SPHPP_CIC_MCF7_OT_GEL_NewS_FDR_1protein_curated
- ModificationList: iodoacetamide derivatized residue, fragment neutral loss, monohydroxylated residue, fragment neutral loss,
- Name: SPHPP_CIC_MCF7_OT_GEL_NewS_FDR_1protein_curated
- PublicationRef: pending
- 31017
- InstrumentRef: INSTRUMENT_5
- Label: SPHPP_CNB_MCF7_TT_RPB_R1_PG_curated_FDR1prot
- ModificationList: iodoacetamide derivatized residue, fragment neutral loss, monohydroxylated residue, acetylated residue, fragment neutral loss,
- Name: SPHPP_CNB_MCF7_TT_RPB_R1_PG_curated_FDR1prot
- PublicationRef: pending
- 31011
- InstrumentRef: INSTRUMENT_1
- Label: SPHPP_VHIO_MCF7_QTOF_GEL_curated_FDR1_protein
- ModificationList: iodoacetamide derivatized residue, fragment neutral loss, monohydroxylated residue, fragment neutral loss,
- Name: SPHPP_VHIO_MCF7_QTOF_GEL_curated_FDR1_protein
- PublicationRef: pending
- 31018
- InstrumentRef: INSTRUMENT_2
- Label: SPHPP_IIBB_MCF7_OT_OGEL_MASCOT_curated_FDR1_protein
- ModificationList: iodoacetamide derivatized residue, deaminated residue, fragment neutral loss, monohydroxylated residue, fragment neutral loss,
- Name: SPHPP_IIBB_MCF7_OT_OGEL_MASCOT_curated_FDR1_protein
- PublicationRef: pending
- 31016
- InstrumentRef: INSTRUMENT_5
- Label: SPHPP_CNB_MCF7_TT_GEL_R1_PG_curated_FDR1prot
- ModificationList: iodoacetamide derivatized residue, fragment neutral loss, monohydroxylated residue, acetylated residue, fragment neutral loss,
- Name: SPHPP_CNB_MCF7_TT_GEL_R1_PG_curated_FDR1prot
- PublicationRef: pending
- 31012
- InstrumentRef: INSTRUMENT_1
- Label: SPHPP_VHIO_MCF7_QTOF_RP_curated_FDR1_protein
- ModificationList: iodoacetamide derivatized residue, fragment neutral loss, monohydroxylated residue, fragment neutral loss,
- Name: SPHPP_VHIO_MCF7_QTOF_RP_curated_FDR1_protein
- PublicationRef: pending
- 31013
- InstrumentRef: INSTRUMENT_3
- Label: SPHPP_PCB_SG_MCF7_curated_FDR1_protein
- ModificationList: iodoacetamide derivatized residue, fragment neutral loss, monohydroxylated residue, deaminated residue, fragment neutral loss,
- Name: SPHPP_PCB_SG_MCF7_curated_FDR1_protein
- PublicationRef: pending
- 31015
- InstrumentRef: INSTRUMENT_3
- Label: SPHPP_CIB_MCF7_ProteinGrouping_curated_FDR1_protein
- ModificationList: iodoacetamide derivatized residue, fragment neutral loss, monohydroxylated residue, fragment neutral loss,
- Name: SPHPP_CIB_MCF7_ProteinGrouping_curated_FDR1_protein
- PublicationRef: pending
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