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PXD000442 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleChr16-HPP. Shotgun Analysis improvement. JPR HPP Special issue 2013. MCF7 Cell line.
DescriptionThe Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To do this study four human cell lines were selected, MCF7 epithelial cells, CCD18 colon fibroblasts, Ramos and Jurkat B and T lymphocytes respectively. In particular, this subset includes all the data regarding the MCF7 cell line. 6 laboratories contributed to compile all the reported data.
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterJ. Alberto Medina-Aunon
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListdeaminated residue; acetylated residue; monohydroxylated residue; iodoacetamide derivatized residue
Instrumentinstrument model: TripleTOF 5600; LTQ Orbitrap Velos; instrument model: LTQ Orbitrap Velos; instrument model: LTQ Orbitrap; TripleTOF 5600; instrument model: Bruker Daltonics maXis series; instrument model: Thermo Fisher Scientific instrument model; LTQ Orbitrap
Dataset History
RevisionDatetimeStatusChangeLog Entry
02013-09-02 07:27:14ID requested
12013-09-04 20:00:23announced
12013-11-19 10:09:18announced
22017-06-21 00:30:41announcedUpdated project metadata.
32017-10-24 00:13:17announcedUpdated project metadata.
Publication List
Segura V, Medina-Aunon JA, Mora MI, Mart, í, nez-Bartolom, é S, Abian J, Aloria K, Ant, ú, nez O, Arizmendi JM, Azkargorta M, Barcel, ó, -Batllori S, Beaskoetxea J, Bech-Serra JJ, Blanco F, Monteiro MB, C, á, ceres D, Canals F, Carrascal M, Casal JI, Clemente F, Colom, é N, Dasilva N, D, í, az P, Elortza F, Fern, á, ndez-Puente P, Fuentes M, Gallardo O, Gharbi SI, Gil C, Gonz, á, lez-Tejedo C, Hern, á, ez ML, Lombard, í, a M, Lopez-Lucendo M, Marcilla M, Mato JM, Mendes M, Oliveira E, Orera I, Pascual-Montano A, Prieto G, Ruiz-Romero C, S, á, nchez del Pino MM, Tabas-Madrid D, Valero ML, Vialas V, Villanueva J, Albar JP, Corrales FJ, Surfing transcriptomic landscapes. A step beyond the annotation of chromosome 16 proteome. J Proteome Res, 13(1):158-72(2014) [pubmed]
Keyword List
ProteomeXchange project tag: Chromosome-centric Human Proteome Project (C-HPP), Human Proteome Project
submitter keyword: HPP,MIAPE,Networking,Chromosome centric
Contact List
J. Alberto Medina-Aunon
contact affiliationProteomics - Bioinformatics
contact emailjamedina@proteored.org
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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