PXD000053-1

PXD000053 is an original dataset announced via ProteomeXchange.

Title	Lotus japonicus phosphopeptide
Description	Phosphopeptides were purified using Titansphere. Before MS analysis, phosphopeptides were desalted using StageTips with C18 Empore disk membranes. Phosphopeptides were analysed by Orbitrap MS.The obtained MS and MS/MS spectra data were searched against Kazusa DNA Research Institute published lotus EST database using the MASCOT program (FDR<1%).
HostingRepository	PRIDE
AnnounceDate	2013-10-29
AnnouncementXML	Submission_2013-10-29_04:54:07.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000053
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Yoko Ino
SpeciesList	scientific name: Lotus japonicus; NCBI TaxID: 34305;
ModificationList	carbamoylated residue; phosphorylated residue; iodoacetamide derivatized residue; neutral loss: 97.976896; monohydroxylated residue; neutral loss: 63.998285
Instrument	radial ejection linear ion trap

Revision	Datetime	Status	ChangeLog Entry
0	2012-10-18 02:25:40	ID requested
⏵ 1	2013-10-29 04:54:23	announced
2	2014-05-21 05:13:11	announced	Updated publication reference for PubMed record(s): 24227553.
3	2014-07-23 07:55:25	announced	Updated project metadata.
4	2024-10-07 08:43:39	announced	2024-10-07: Updated project metadata.

Dataset with its publication pending

submitter keyword: phosphopeptide

Yoko Ino
contact affiliation	Advanced medical research center
contact email	yino@tsurumi.yokohama-cu.ac.jp

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/10/PXD000053

• PRIDE
  1. 27707
     1. InstrumentRef: INSTRUMENT_1
     2. Label: h2
     3. ModificationList: phosphorylated residue, carbamoylated residue, neutral loss, iodoacetamide derivatized residue, monohydroxylated residue, neutral loss,
     4. Name: hypocotyl_2
     5. PublicationRef: pending
  2. 27704
     1. InstrumentRef: INSTRUMENT_1
     2. Label: c2
     3. ModificationList: carbamoylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, monohydroxylated residue, neutral loss,
     4. Name: cotyledon_2
     5. PublicationRef: pending
  3. 27706
     1. InstrumentRef: INSTRUMENT_1
     2. Label: h1
     3. ModificationList: phosphorylated residue, carbamoylated residue, neutral loss, monohydroxylated residue, neutral loss, iodoacetamide derivatized residue,
     4. Name: hypocotyl_1
     5. PublicationRef: pending
  4. 27708
     1. InstrumentRef: INSTRUMENT_1
     2. Label: h3
     3. ModificationList: carbamoylated residue, phosphorylated residue, iodoacetamide derivatized residue, neutral loss, monohydroxylated residue,
     4. Name: hypocotyl_3
     5. PublicationRef: pending
  5. 27705
     1. InstrumentRef: INSTRUMENT_1
     2. Label: c3
     3. ModificationList: carbamoylated residue, phosphorylated residue, neutral loss, iodoacetamide derivatized residue, monohydroxylated residue, neutral loss,
     4. Name: cotyledon_3
     5. PublicationRef: pending
  6. 27703
     1. InstrumentRef: INSTRUMENT_1
     2. Label: c1
     3. ModificationList: carbamoylated residue, phosphorylated residue, iodoacetamide derivatized residue, neutral loss, monohydroxylated residue, neutral loss,
     4. Name: cotyledon_1
     5. PublicationRef: pending