PXD000039-1

PXD000039 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Chr16-HPP.Pilot experiment.JPR HPP Special issue
Description	"The Chromosome 16 Consortium is integrated in the Human Proteome Project that aims to develop an entire map of the proteins encoded by the human genome following a gene-centric strategy (C-HPP) to make progress in the understanding of human biology in health and disease (B/D-HPP). To characterize the proteome of Chr16, three cell lines were selected, MCF7 breast cancer human epithelial cells, CCD18 human colon fibroblasts, and Jurkat human T lymphocytes. "
HostingRepository	PRIDE
AnnounceDate	2013-01-16Z
AnnouncementXML	Submission_2013-01-15_17:57:52.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000039
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	J. Alberto Medina-Aunon
SpeciesList	scientific name: Human; NCBI TaxID: 9606;
ModificationList	fragment neutral loss: 0.0; Oxidation; fragment neutral loss: 63.998285; Acetyl; Carbamidomethyl
Instrument	dissociation method

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2012-09-26 04:29:59	ID requested
⏵ 1	2013-01-15 01:43:52	announced
2	2013-01-15 09:13:14	announced	missing
3	2013-01-15 17:57:52	announced	Add reference
4	2024-10-07 08:42:42	announced	2024-10-07: Updated project metadata.

Publication List

Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, Gonz, á, lez-Tejedo C, S, á, nchez del Pino MM, Canals F, Fuentes M, Casal JI, Mart, í, nez-Bartolom, é S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ, Spanish human proteome project: dissection of chromosome 16. J Proteome Res, 12(1):112-22(2013) [pubmed]

Segura V, Medina-Aunon JA, Guruceaga E, Gharbi SI, Gonz, á, lez-Tejedo C, S, á, nchez del Pino MM, Canals F, Fuentes M, Casal JI, Mart, í, nez-Bartolom, é S, Elortza F, Mato JM, Arizmendi JM, Abian J, Oliveira E, Gil C, Vivanco F, Blanco F, Albar JP, Corrales FJ, Spanish human proteome project: dissection of chromosome 16. J Proteome Res, 12(1):112-22(2013) [pubmed]

Keyword List

submitter keyword: "HPP, Human, MIAPE"

submitter keyword: "HPP, Human, MIAPE"

Contact List

J. Alberto Medina-Aunon
contact affiliation	CNB-CSIC. ISCIII ProteoRed. Computational Proteomics
contact email	jamedina@proteored.org
Carmen Gonzalez
contact attribute	Department:Proteomics Unit Position:researcher e-mail:cgonzalez@cnb.csic.es
contact affiliation	CNB-CSIC
contact email	cgonzalez@cnb.csic.es
Manuel Sánchez del Pino
contact attribute	Department:Fibroblastos de colon Position:researcher Address:Dr Moliner 50, 46100 Burjassot Valencia e-mail:sandelpi@uv.es Telephone:96-3543464
contact affiliation	UV
contact email	sandelpi@uv.es
Severine Gharbi
contact attribute	Department:Proteomics Unit Position:researcher e-mail:sgharbi@cnb.csic.es
contact affiliation	CNB-CSIC
contact email	sgharbi@cnb.csic.es

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/01/PXD000039

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/01/PXD000039

Repository Record List

[ + ]

PRIDE
1. 27359
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_15_(2).mzid'
  3. ModificationList: Carbamidomethyl, Acetyl, fragment neutral loss, Oxidation, fragment neutral loss,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
2. 27344
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001944_Frac15_completo_(1).mzid'
  3. ModificationList: Acetyl, fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
3. 27333
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001933_Frac4_completo_(4).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, fragment neutral loss, Carbamidomethyl, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
4. 27353
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_9.mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
5. 27341
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001941_Frac12_completo_(1).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
6. 27367
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP Jkt CHAPS FR10_(1).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, Acetyl, fragment neutral loss,
  4. Name: SHPP_CNB_Jurkat_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
7. 27346
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_2.mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, Acetyl, fragment neutral loss,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
8. 27331
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001931_Frac2_completo_(1).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
9. 27369
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP Jkt CHAPS FR9_(4).mzid'
  3. ModificationList: Carbamidomethyl, Acetyl, fragment neutral loss, Oxidation, fragment neutral loss,
  4. Name: SHPP_CNB_Jurkat_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
10. 27362
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP Jkt CHAPS FR3_(1).mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_Jurkat_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
11. 27355
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_11_(1).mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, Acetyl, fragment neutral loss,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
12. 27365
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP Jkt CHAPS FR7_(2).mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_Jurkat_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
13. 27343
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001943_Frac14_completo_(1).mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, fragment neutral loss, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
14. 27337
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001937_Frac8_completo_(1).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, fragment neutral loss, Carbamidomethyl, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
15. 27361
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP Jkt CHAPS FR2_(4).mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_Jurkat_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
16. 27366
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP Jkt CHAPS FR8_(1).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_Jurkat_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
17. 27363
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP Jkt CHAPS FR5_(1).mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_Jurkat_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
18. 27357
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_13.mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, Acetyl, fragment neutral loss,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
19. 27330
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001930_Frac1_completo_(1).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, fragment neutral loss, Acetyl, Carbamidomethyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
20. 27339
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001940_Frac10_completo_(1).mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, fragment neutral loss, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
21. 27332
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001932_Frac3_completo_(1).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
22. 27351
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_7.mzid'
  3. ModificationList: Acetyl, Carbamidomethyl, fragment neutral loss, Oxidation, fragment neutral loss,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
23. 27364
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP Jkt CHAPS FR6_(2).mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_Jurkat_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
24. 27334
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001935_Frac5_completo_(2).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, fragment neutral loss, Carbamidomethyl, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
25. 27358
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_14.mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, Acetyl, fragment neutral loss,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
26. 27340
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001939_Frac11_completo_(1).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, fragment neutral loss, Carbamidomethyl, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
27. 27335
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001936_Frac6_completo_(1).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, fragment neutral loss, Carbamidomethyl, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
28. 27356
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_12.mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, Acetyl, fragment neutral loss,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
29. 27368
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP Jkt CHAPS FR4_(4).mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_Jurkat_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
30. 27345
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_1.mzid'
  3. ModificationList: fragment neutral loss, Oxidation, fragment neutral loss, Carbamidomethyl, Acetyl,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
31. 27360
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP Jkt CHAPS Fr1_(4).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_Jurkat_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
32. 27350
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_6.mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
33. 27336
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001934_Frac7_completo_(1).mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, fragment neutral loss, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
34. 27349
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_5.mzid'
  3. ModificationList: Carbamidomethyl, Acetyl, fragment neutral loss, Oxidation, fragment neutral loss,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
35. 27342
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001942_Frac13_completo_(1).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
36. 27347
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_3.mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
37. 27338
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'F001938_Frac9_completo_(2).mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss, Acetyl,
  4. Name: SHPP_UV_CCD18_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
38. 27348
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_4.mzid'
  3. ModificationList: fragment neutral loss, Oxidation, Carbamidomethyl, fragment neutral loss, Acetyl,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
39. 27354
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_10.mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, Acetyl, fragment neutral loss,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512
40. 27352
  1. InstrumentRef: TripleTOF_5600
  2. Label: MIAPE MSI from 'HPP MCF7 RP-HPLC Fr_8.mzid'
  3. ModificationList: Carbamidomethyl, fragment neutral loss, Oxidation, Acetyl, fragment neutral loss,
  4. Name: SHPP_CNB_MCF7_5600_MiapeCompliance
  5. PublicationRef: PMID23234512