PXD000021-2

PXD000021 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	D-score
Description	Processing of the dataset of synthetic phosphopeptides by Savitzki et al. (MCP, 2011) using multiple search engines. Establishment of the D-score: a search engine independent MD-score.
HostingRepository	PRIDE
AnnounceDate	2013-01-23
AnnouncementXML	Submission_2013-01-23_04:01:24.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD000021
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Lennart Martens
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	Oxidation: 15.994915; phosphorylated residue: 79.966331; Carbamidomethyl: 57.021464; 2-pyrrolidone-5-carboxylic acid (Gln): -17.026549; 2-pyrrolidone-5-carboxylic acid (Gln): -18.010565; acetylated residue: 42.010565
Instrument	LTQ Orbitrap

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2012-09-03 02:31:29	ID requested
1	2013-01-23 03:06:56	announced
1	2014-07-28 00:20:02	announced
⏵ 2	2013-01-23 04:01:24	announced	Add reference
⏵ 2	2017-06-21 00:30:25	announced	Updated project metadata.
3	2017-10-24 00:11:05	announced	Updated project metadata.

Publication List

Keyword List

submitter keyword: phosphorylation, synthetic peptides, localization score

submitter keyword: phosphorylation, synthetic peptides, localization score

Contact List

Lennart Martens
contact affiliation	Computational Omics and Systems Biology Group Department of Medical Protein Research Universiteit Gent - VIB, Gent, Belgium
contact email	lennart.martens@UGent.be

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/01/PXD000021

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/2013/01/PXD000021

Repository Record List

[ + ]

PRIDE
1. 27185
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score ETD MO
  3. ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation,
  4. Name: D-score ETD Mascot OMSSA
  5. PublicationRef: PMID23307401
2. 27198
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score MSA X
  3. ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl, acetylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), 2-pyrrolidone-5-carboxylic acid (Gln),
  4. Name: D-score MSA XTandem
  5. PublicationRef: PMID23307401
3. 27187
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score ETD O
  3. ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
  4. Name: D-score ETD OMSSA
  5. PublicationRef: PMID23307401
4. 27193
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score HCD X
  3. ModificationList: phosphorylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), Oxidation, acetylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), Carbamidomethyl,
  4. Name: D-score HCD XTandem
  5. PublicationRef: PMID23307401
5. 27190
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score HCD MO
  3. ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation,
  4. Name: D-score HCD Mascot OMSSA
  5. PublicationRef: PMID23307401
6. 27186
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score ETD MOX
  3. ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation, 2-pyrrolidone-5-carboxylic acid (Gln), 2-pyrrolidone-5-carboxylic acid (Gln), acetylated residue,
  4. Name: D-score ETD Mascot OMSSA XTandem
  5. PublicationRef: PMID23307401
7. 27182
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score CID O
  3. ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation,
  4. Name: D-score CID OMSSA
  5. PublicationRef: PMID23307401
8. 27184
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score ETD M
  3. ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
  4. Name: D-score ETD Mascot
  5. PublicationRef: PMID23307401
9. 27188
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score ETD X
  3. ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation, 2-pyrrolidone-5-carboxylic acid (Gln), acetylated residue, 2-pyrrolidone-5-carboxylic acid (Gln),
  4. Name: D-score ETD XTandem
  5. PublicationRef: PMID23307401
10. 27180
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score CID MO
  3. ModificationList: Oxidation, phosphorylated residue, Carbamidomethyl,
  4. Name: D-score CID Mascot OMSSA
  5. PublicationRef: PMID23307401
11. 27196
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score MSA MOX
  3. ModificationList: Oxidation, Carbamidomethyl, phosphorylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), 2-pyrrolidone-5-carboxylic acid (Gln), acetylated residue,
  4. Name: D-score MSA Mascot OMSSA XTandem
  5. PublicationRef: PMID23307401
12. 27179
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score CID M
  3. ModificationList: Oxidation, phosphorylated residue, Carbamidomethyl,
  4. Name: D-score CID Mascot
  5. PublicationRef: PMID23307401
13. 27191
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score HCD MOX
  3. ModificationList: phosphorylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), Carbamidomethyl, Oxidation, acetylated residue, 2-pyrrolidone-5-carboxylic acid (Gln),
  4. Name: D-score Mascot OMSSA XTandem
  5. PublicationRef: PMID23307401
14. 27197
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score MSA O
  3. ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
  4. Name: D-score MSA OMSSA
  5. PublicationRef: PMID23307401
15. 27183
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score CID X
  3. ModificationList: phosphorylated residue, 2-pyrrolidone-5-carboxylic acid (Gln), Carbamidomethyl, Oxidation, 2-pyrrolidone-5-carboxylic acid (Gln), acetylated residue,
  4. Name: D-score CID XTandem
  5. PublicationRef: PMID23307401
16. 27189
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score HCD M
  3. ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
  4. Name: D-score HCD Mascot
  5. PublicationRef: PMID23307401
17. 27195
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score MSA MO
  3. ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation,
  4. Name: D-score MSA Mascot OMSSA
  5. PublicationRef: PMID23307401
18. 27194
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score MSA M
  3. ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
  4. Name: D-score MSA Mascot
  5. PublicationRef: PMID23307401
19. 27181
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score CID MOX
  3. ModificationList: phosphorylated residue, Carbamidomethyl, Oxidation, 2-pyrrolidone-5-carboxylic acid (Gln), 2-pyrrolidone-5-carboxylic acid (Gln), acetylated residue,
  4. Name: PD-score CID Mascot OMSSA XTandem
  5. PublicationRef: PMID23307401
20. 27192
  1. InstrumentRef: INSTRUMENT_1
  2. Label: D-score HCD O
  3. ModificationList: phosphorylated residue, Oxidation, Carbamidomethyl,
  4. Name: D-score HCD OMSSA
  5. PublicationRef: PMID23307401