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RPXD018491

RPXD018491 is container for one or more analyses. The general container metadata is provided below and the table under Dataset History provides links to the various reanalyses have been provided (if any) in this container.

Reanalysis Container Summary
TitleReanalysis dataset of JPST000089
DescriptionProteome analyses of human dermal fibroblasts (Tig120) was performed using a two-meter-long monolithic silica C18 capillary columns without prefractionation by TripleTOF5600. For this reanalysis, MS Datasets were processed for peak picking with ProteinPilot 5.0 rev.4769, and the generated peak lists were searched against human entries of UniProt/Swiss-Prot release 2018_10 using three search engines: ProteinPilot 5.0 rev.4769, X!Tandem v2015.04.01.1, and Comet 2015.02 rev. 0. The decoy database was generated by reversing sequences from the database. Then, the sum of the total number of matched b/y ions and the total number of amino acids comprising the peptide sequence tag were counted to score the reliability of peptide identification independent of these search engines. Finally, the 1% false discovery rate was controlled by the target-decoy approach with this score.
HostingRepositoryjPOST
AnnounceDate2020-06-04
AnnouncementXMLSubmission_2022-09-18_03:53:01.528.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/RPXD018491
ReviewLevelNon peer-reviewed dataset
DatasetOriginReanalysis of JPST000089
RepositorySupportSupported dataset by repository
PrimarySubmitterjPOST reanalysis
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListS-carboxamidomethyl-L-cysteine; L-methionine sulfoxide
InstrumentTripleTOF 5600
Dataset History
ReanalysisRevisionDatetimeStatusTitle / ChangeLog Entry
02020-04-12 23:25:34ID requested
012020-06-03 18:54:11announcedReanalysis dataset of JPST000089
022021-02-04 16:44:28announcedReanalysis dataset of JPST000089
2021-02-04: Updated description and FTP location.
032022-09-18 03:53:01announcedReanalysis dataset of JPST000089
2022-09-18: Updated FTP location.
Publication List
no publication
Keyword List
submitter keyword: reanalysis
Contact List
Yasushi Ishihama
lab head
jPOST reanalysis
contact affiliationjPOST
contact emailreanalysis@jpostdb.org
dataset submitter
Full Dataset Link List
jPOST dataset URI
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.jpostdb.org/JPST000817/