RPXD018482 is container for
one or more analyses. The general container metadata is provided below and the table under Dataset History provides links to the various reanalyses have been provided (if any) in this container.
Reanalysis Container Summary
| Title | Reanalysis dataset of JPST000210 |
| Description | Dataset was processed for peak picking with MaxQuant1.6.2.10 and the generated peak lists were searched against UniProt reference proteome of Escherichia coli (release 2020_01) using three search engines: MaxQuant1.6.2.10, X!Tandem v2015.04.01.1, and and Comet2015.02 rev. 0. The decoy database was generated by reversing sequences from UniProt reference proteome of Escherichia coli (release 2020_01). Then, the jPOST score (a utilization of posterior peptide sequence tags) was calculated to score the reliability of peptide identification, independent of these search engines. Search results were re-scored by jPOST score for the target-decoy approach (FDR=1%). |
| HostingRepository | jPOST |
| AnnounceDate | 2020-05-27 |
| AnnouncementXML | Submission_2020-05-26_23:40:57.xml |
| DigitalObjectIdentifier | https://dx.doi.org/10.6019/RPXD018482 |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Reanalysis of JPST000210 |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | jPOST reanalysis |
| SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
| ModificationList | S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide; O-phospho-L-serine; O-phospho-L-threonine; O4'-phospho-L-tyrosine |
| Instrument | LTQ Orbitrap Velos |
Dataset History
| Reanalysis | Revision | Datetime | Status | Title / ChangeLog Entry |
|---|
| 0 | 2020-04-12 23:24:03 | ID requested | |
| 0 | 1 | 2020-05-26 23:40:57 | announced | Reanalysis dataset of JPST000210 |
| 0 | 2 | 2021-02-04 16:36:51 | announced | Reanalysis dataset of JPST000210
2021-02-04: Updated description and FTP location. |
| 0 | 3 | 2022-09-18 03:12:32 | announced | Reanalysis dataset of JPST000210
2022-09-18: Updated FTP location. |
Publication List
Keyword List
| submitter keyword: reanalysis |
Contact List
| Yasushi Ishihama |
|---|
| lab head | |
| jPOST reanalysis |
|---|
| contact affiliation | jPOST |
| contact email | reanalysis@jpostdb.org |
| dataset submitter | |
Full Dataset Link List
| jPOST dataset URI |
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://jpost.pharm.kyoto-u.ac.jp/repository/JPST000808 |
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