RPXD006668.1-1
RPXD006668.1 is a reanalysis of an original dataset. All reanalyses under this identifier are organized under a container with general attributes common to all reanalyses. Other reanalyses (if any) may be accessed by viewing the top-level container. Note that there may also be multiple revisions of each reanalysis, generally to correct errors.
[View Reanalysis Container RPXD006668]
Dataset Summary
Title | [CCMS RPXD] PRIDE PXD000561 - A draft map of the human proteome |
Description | CCMS reanalysis of source datasets: PXD000561 Click MSV000079514 to see all reanalysis results. The availability of human genome sequence has transformed biomedical research over the past decade. However, an equivalent map for the human proteome with direct measurements of proteins and peptides does not exist yet. Here, we report a draft map of the human proteome based on high resolution Fourier transform mass spectrometry-based proteomics technology. In-depth proteomic profiling of 30 histologically normal human samples including 17 adult tissues, 7 fetal tissues and 6 purified primary hematopoietic cells resulted in identification of proteins encoded by greater than 17,000 genes accounting for ~84% of the total annotated protein-coding genes in humans. This large human proteome catalog (available as an interactive web-based resource at http://www.humanproteomemap.org) will complement available human genome and transcriptome data to accelerate biomedical research in health and disease. The authors request that those considering use of this dataset for commercial purposes contact pandey@jhmi.edu. |
HostingRepository | MassIVE |
AnnounceDate | 2017-06-06 |
AnnouncementXML | Submission_2017-06-06_15:15:03.xml |
DigitalObjectIdentifier | |
ReviewLevel | Non peer-reviewed dataset |
DatasetOrigin | Reanalysis of MSV000079514 |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | CCMS System |
SpeciesList | scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606; |
ModificationList | acetylated residue; iodoacetamide derivatized residue; L-methionine sulfoxide |
Instrument | LTQ Orbitrap Velos; LTQ Orbitrap Elite |
Dataset History
Reanalysis | Revision | Datetime | Status | Title / ChangeLog Entry |
---|---|---|---|---|
1 | 1 | 2017-06-06 15:15:03 | announced | [CCMS RPXD] PRIDE PXD000561 - A draft map of the human proteome CCMS reanalysis: MSGF+ Re-analysis by tissue - 1% PSM level FDR Submitted by CCMS System |
Publication List
no publication |
Keyword List
submitter keyword: MassIVE, reanalysis |
Contact List
CCMS System | |
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contact affiliation | CCMS |
contact email | ccms@proteomics.ucsd.edu |
lab head |
Full Dataset Link List
MassIVE dataset URI |
Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000079514 |