RPXD000650-1
RPXD000650 is an old-style reanalysis announcement missing a container. This dataset should be updated with a proper container and revision following 2019 ProteomeXchange protocols.
Outdated Reanalysis Missing a Container Summary
| Title | Reprocessed: Mycobacterium tuberculosis culture filtrate LC-MS/MS |
| Description | Triplicate culture filtrate samples of normal (log phase) and PBS cultured (starvation) M. tuberculosis were separated by SDS-PAGE, and 10 bands were excised from each lane after staining with Coomassie R-250. In-gel trypsin digestion was performed on gel bands followed by nanoLC. Eluting peptides were then analyzed on an LTQ FT instrument, and the resulting raw files were searched with Sequest (part of Proteome Discoverer) against an M. tuberculosis H37Rv database (downloaded from the Sanger Centre). The final combined dataset comprised 12,399 unique peptides derived from 1,362 proteins, each identified by a minimum of two distinct peptides. Reprocessed by PeptideAtlas; |
| HostingRepository | PeptideAtlas |
| AnnounceDate | 2013-12-16 |
| AnnouncementXML | Submission_2013-12-16_11:21:58.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Reanalysis of PXD000111 |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Zhi Sun |
| SpeciesList | scientific name: Mycobacterium tuberculosis H37Rv; NCBI TaxID: 83332; |
| ModificationList | S-carboxamidomethyl-L-cysteine; L-methionine sulfoxide |
| Instrument | LTQ FT |
Dataset History
| Reanalysis | Revision | Datetime | Status | Title / ChangeLog Entry |
|---|---|---|---|---|
| 0 | 2013-12-16 11:10:59 | ID requested | ||
| 1 | 2013-12-16 11:22:14 | announced | Reprocessed: Mycobacterium tuberculosis culture filtrate LC-MS/MS | |
| 2 | 2013-12-16 12:14:04 | announced | Reprocessed: Mycobacterium tuberculosis culture filtrate LC-MS/MS Update description | |
| 3 | 2013-12-17 14:37:32 | announced | Reprocessed: Mycobacterium tuberculosis culture filtrate LC-MS/MS Updated to XML 1.2 |
Publication List
| no publication |
Keyword List
| curator keyword: Tuberculosis, LC-MS/MS, culture filtrate |
Contact List
| Zhi Sun | |
|---|---|
| contact affiliation | Institute for Systems Biology |
| contact email | zhi.sun@systemsbiology.org |
| dataset submitter | |
| Eric Deutsch | |
| contact affiliation | Institute for Systems Biology |
| contact email | edeutsch@systemsbiology.org |
| lab head | |
Full Dataset Link List
| PeptideAtlas dataset URI |
| PeptideAtlas dataset URI |
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