PXD045423

PXD045423 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Dynamics of single-cell protein covariation during epithelial-mesenchymal transition
Description	Single cell proteomic dataset (~420 cells passing filter, 1827 proteins at 1% FDR and 4096 proteins post update via DART-ID) characterizing the Epithelial to Mesenchymal transition induced by TGF-B in MCF10A cells. Cells were sampled from day 0 (epithelial), day 3 (intermediate) and day 9 (sustained) treatment. The single cell samples were prepped using nPoP and prepared in the SCoPE2 format. Dataset also includes two bulk biological replicates (samples from day 0, 3 and 9 respectively) that were analyzed via label free DIA.
HostingRepository	MassIVE
AnnounceDate	2023-12-21
AnnouncementXML	Submission_2023-12-21_16:14:05.278.xml
DigitalObjectIdentifier
ReviewLevel	Non peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Saad Khan
SpeciesList	scientific name: Homo sapiens; common name: human; NCBI TaxID: 9606;
ModificationList	acetylated residue; L-methionine sulfoxide
Instrument	Q Exactive

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2023-09-15 14:59:06	ID requested
⏵ 1	2023-12-21 16:14:05	announced

Publication List

no publication

no publication

Keyword List

submitter keyword: Single Cell Proteomics, nPoP, SCoPE2, Bulk LF DIA, Epithelial to Mesenchymal Transition

submitter keyword: Single Cell Proteomics, nPoP, SCoPE2, Bulk LF DIA, Epithelial to Mesenchymal Transition

Contact List

Nikolai Slavov
contact affiliation	Northeastern University
contact email	nslavov@northeastern.edu
lab head
Saad Khan
contact affiliation	Northeastern University
contact email	khan.saad@northeastern.edu
dataset submitter

Full Dataset Link List

MassIVE dataset URI
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MassIVE dataset URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000092872/