<<< Full experiment listing

PXD042154-1

PXD042154 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleBlood RNAs predictive of molecular changes in the brain and clinical outcome in Parkinson’s disease
DescriptionThe ability to use blood to predict the outcomes of Parkinson’s disease (PD), including disease progression and development of cognitive and motor complications, would be of enormous clinical value. We undertook deep RNA sequencing from the caudate and putamen of postmortem PD (n=35) and control (n=40) striatum, and compared molecular profiles with clinical features, and samples obtained from antemortem peripheral blood from an independent cohort. Cognitive and motor complications of PD were associated with molecular changes in the caudate (e.g., stress response) and putamen (endothelial pathways) respectively. Later and earlier-onset PD were molecularly distinct, and disease duration was associated with changes in caudate (oligodendrocyte development) and putamen (cellular senescence) respectively. Molecular signatures in the postmortem PD brain were also evident in antemortem peripheral blood, and correlated with clinical disease features. Together, these findings identify molecular signatures in PD patients' brain and blood of potential pathophysiologic and prognostic importance
HostingRepositoryPRIDE
AnnounceDate2023-07-05
AnnouncementXMLSubmission_2023-07-05_11:01:12.101.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterSorenHeissel
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListNo PTMs are included in the dataset
InstrumentOrbitrap Fusion Lumos
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-05-11 14:15:00ID requested
12023-07-05 11:01:12announced
22023-11-14 07:03:28announced2023-11-14: Updated project metadata.
Publication List
Keyword List
submitter keyword: Striatum,Parkinson’s disease
Contact List
Robert B.Darnell
contact affiliationLaboratory of Molecular Neuro-oncology, The Rockefeller University, 1230 York Avenue, New York, NY 10065
contact emaildarnelr@rockefeller.edu
lab head
SorenHeissel
contact affiliationResearch Support Specialist
contact emailsheissel@rockefeller.edu
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/07/PXD042154
PRIDE project URI
Repository Record List
[ + ]