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PXD039183-1

PXD039183 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleThe autophagy receptor NBR1 directs the clearance of photodamaged chloroplasts
DescriptionThe ubiquitin-binding NBR1 autophagy receptor plays a prominent role in recognizing ubiquitylated protein aggregates for vacuolar degradation during macroautophagy. Here, we show that upon exposing Arabidopsis plants to intense light, NBR1 associates with photodamaged chloroplasts independently of ATG7, a core component of the canonical autophagy machinery. NBR1 coats both the surface and interior of chloroplasts which is then followed by direct engulfment of the organelle into the central vacuole via a microautophagy-type process. The relocalization of NBR1 into chloroplasts does not require the chloroplast translocon complexes embedded in the envelope but is instead greatly enhanced by removing the self-oligomerization mPB1 domain of NBR1. The delivery of NBR1-decorated chloroplasts into vacuoles depends on the ubiquitin-binding UBA2 domain of NBR1 but is independent of the E3 ligases SP1 and PUB4, known to direct the ubiquitylation of chloroplast surface proteins. Compared to wild type plants, nbr1 mutants have altered levels of a subset of chloroplast proteins and display abnormal chloroplast density and sizes upon high light exposure. We postulate that, as photodamaged chloroplasts lose envelope integrity, cytosolic ligases reach the chloroplast interior to ubiquitylate thylakoid and stroma proteins which are then recognize by NBR1 for autophagic clearance. This study uncovers a new function of NBR1 in the degradation of damaged chloroplasts by microautophagy.
HostingRepositoryPRIDE
AnnounceDate2023-01-16
AnnouncementXMLSubmission_2023-01-16_11:04:10.354.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterKuo-EnChen
SpeciesList scientific name: Arabidopsis thaliana (Mouse-ear cress); NCBI TaxID: 3702;
ModificationListcarbamoylated residue; acetylated residue
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02023-01-02 19:12:40ID requested
12023-01-16 11:04:10announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: microautophagy, ubiquitin.,NBR1, chlorophagy
Contact List
Richard D.Vierstra
contact affiliationBiology department, Washington University in Saint Louis, Saint Louis, MO, USA
contact emailrdvierstra@wustl.edu
lab head
Kuo-EnChen
contact affiliationDepartment of Biology, Washington University in St. Louis
contact emailkuo-en@wustl.edu
dataset submitter
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Dataset FTP location
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