PXD037587 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | T cells of colorectal cancer patients’ stimulated by neoantigenic and cryptic peptides better recognize autologous tumor cells |
Description | Immunopeptidome analysis of patient-derived colorectal cancer cell lines HROC113 and HROC285 T0 M2 from the HROC collection [Mullins et al. Cancers (Basel). 2019;11(10):1520. doi: 10.3390/cancers11101520] was performed to characterize the natural HLA class I presented ligandome in native as well as IFNγ treated cells. |
HostingRepository | PRIDE |
AnnounceDate | 2023-03-11 |
AnnouncementXML | Submission_2023-03-10_16:21:03.652.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | MarkusLöffler |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Fusion Lumos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-10-20 02:08:15 | ID requested | |
⏵ 1 | 2023-03-10 16:21:04 | announced | |
2 | 2023-11-14 08:05:35 | announced | 2023-11-14: Updated project metadata. |
Publication List
Schwarz S, Schmitz J, L, ö, ffler MW, Ghosh M, Rammensee HG, Olshvang E, Markel M, Mockel-Tenbrinck N, Dzionek A, Krake S, Arslan B, Kampe KD, Wendt A, Bauer P, Mullins CS, Schlosser A, Linnebacher M, T cells of colorectal cancer patients' stimulated by neoantigenic and cryptic peptides better recognize autologous tumor cells. J Immunother Cancer, 10(12):(2022) [pubmed] |
Keyword List
submitter keyword: HLA-presented peptides |
neoepitope, Colorectal Cancer, Human, HLA class I, Antigen Presentation,LC-MSMS |
Contact List
Hans-GeorgRammensee |
contact affiliation | Department of Immunology, Interfaculty Institute for Cell Biology, University of Tübingen, Tübingen, Germany |
contact email | rammensee@uni-tuebingen.de |
lab head | |
MarkusLöffler |
contact affiliation | University of Tübingen |
contact email | markus.loeffler@med.uni-tuebingen.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD037587 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD037587
- Label: PRIDE project
- Name: T cells of colorectal cancer patients’ stimulated by neoantigenic and cryptic peptides better recognize autologous tumor cells