PXD035675 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | study on the ppGpp-mediated stringent response of E. coli during nutrient downshift |
Description | There are three projects including AE155LQ, RE161LQ, RE235LQ. AE155LQ is about the proteomes of wild type cells (WT) and E. coli RelA* OE strain during exponential growth in glucose cAA medium. E1 & E2 corresponds to the wild type cells (two biological replicate samples) and E3 & E4 corresponds to RelA* OE data (two biological replicate samples). RE161LQ is about the time-course proteome of wild type (four samples including WT_0, WT_20, WT_40 and WT_80) vs relA-deficient strain (relA_0, relA_1.5 h, relA_3 h and relA_4.5 h) during AA downshift. RE235Q is about the time-course proteome of wild type (three samples including WT_0, WT_60, WT_160) vs relA-deficient strain (three samples including relA_0, relA_60 and relA_160) during carbon downshift. |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_08:57:36.190.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Xiongfeng Dai |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; |
ModificationList | No PTMs are included in the dataset |
Instrument | timsTOF Pro |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-08-01 02:43:04 | ID requested | |
1 | 2023-01-26 02:41:01 | announced | |
⏵ 2 | 2023-11-14 08:57:36 | announced | 2023-11-14: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: ppGpp |
relA mutant |
E. coli |
Contact List
Xiongfeng Dai & Manlu Zhu |
contact affiliation | School of Life Sciences, Central China Normal University, Wuhan, Hubei province, China |
contact email | daixiongfeng@ccnu.edu.cn |
lab head | |
Xiongfeng Dai |
contact affiliation | Central China Normal University |
contact email | daixiongfeng@ccnu.edu.cn |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/01/PXD035675 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD035675
- Label: PRIDE project
- Name: study on the ppGpp-mediated stringent response of E. coli during nutrient downshift