PXD035652 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic and phosphoproteomic profiling reveals the oncogenic role of protein kinase D family kinases in cholangiocarcinoma |
Description | To systematically characterize the kinome of the CCA, the proteomic and phosphoproteomic profiling of CCA tumors with NATs was performed using LC-MS/MS (Figure 1). After the extraction and digestion of proteins from each sample, peptides were labeled with TMT reagent and fractionated, and phosphopeptides were enriched with immobilized metal ion affinity chromatography (IMAC). |
HostingRepository | PRIDE |
AnnounceDate | 2023-11-14 |
AnnouncementXML | Submission_2023-11-14_07:59:34.141.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | yun lu |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | phosphorylated residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-08-01 01:56:19 | ID requested | |
1 | 2022-10-17 22:42:37 | announced | |
⏵ 2 | 2023-11-14 07:59:36 | announced | 2023-11-14: Updated project metadata. |
Publication List
Lu Y, Li X, Zhao K, Shi Y, Deng Z, Yao W, Wang J, Proteomic and Phosphoproteomic Profiling Reveals the Oncogenic Role of Protein Kinase D Family Kinases in Cholangiocarcinoma. Cells, 11(19):(2022) [pubmed] |
Keyword List
ProteomeXchange project tag: Cancer (B/D-HPP), Biology/Disease-Driven Human Proteome Project (B/D-HPP), Human Proteome Project |
submitter keyword: protein kinase, phosphoproteomics,cholangiocarcinoma, protein kinase D |
Contact List
Biliary and Pancreatic Surgery/Cancer Research Center |
contact affiliation | Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology |
contact email | drlyly@163.com |
lab head | |
yun lu |
contact affiliation | Huazhong University of Science and Technology |
contact email | drlyly@163.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD035652 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD035652
- Label: PRIDE project
- Name: Proteomic and phosphoproteomic profiling reveals the oncogenic role of protein kinase D family kinases in cholangiocarcinoma