PXD034791 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Streamlined TMT labeling workflow for proteomics and metaproteomics |
Description | This study established a streamlined TMT labeling workflow that is readily compatible with high throughput proteomics and metaproteomics sample preparation. The method was then evaluated using two different sample types, microbiome and intestinal Caco-2 cell line, with TMT11plex mix reagents. |
HostingRepository | PRIDE |
AnnounceDate | 2023-02-07 |
AnnouncementXML | Submission_2023-02-07_09:50:19.063.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | XuZhang |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; scientific name: metagenome; NCBI TaxID: 256318; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion Lumos; Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-06-21 07:45:25 | ID requested | |
⏵ 1 | 2023-02-07 09:50:19 | announced | |
2 | 2023-11-14 08:28:21 | announced | 2023-11-14: Updated project metadata. |
Publication List
Creskey M, Li L, Ning Z, Fekete EE, Mayne J, Walker K, Ampaw A, Ben R, Zhang X, Figeys D, An economic and robust TMT labeling approach for high throughput proteomic and metaproteomic analysis. Proteomics, 23(21-22):e2200116(2023) [pubmed] |
Keyword List
submitter keyword: proteomics, TMT,microbiome, metaproteomics |
Contact List
XuZhang |
contact affiliation | Regulatory research division, Health Canada |
contact email | xu.zhang@hc-sc.gc.ca |
lab head | |
XuZhang |
contact affiliation | University of Ottawa |
contact email | cheuzhang@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/02/PXD034791 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD034791
- Label: PRIDE project
- Name: Streamlined TMT labeling workflow for proteomics and metaproteomics