PXD033870 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic and long-read transcriptomic analysis of Amblyomma americanum salivary gland lysate |
Description | Pioneering studies (PXD014844) have identified many interesting molecules in tick saliva by LC-MS/MS proteomics, but the protein databases used to assign mass spectra were based on short Illumina reads of the Amblyomma americanum transcriptome and may not have captured the diversity and complexity of longer transcripts. Here we apply long-read Pacific Bioscience technologies to complement the previously reported short-read Illumina transcriptome-based proteome in an effort to increase spectrum assignments. Our dataset reveals a small increase in assignable spectra to supplement the previously released short-read transcriptome-based proteome. |
HostingRepository | PRIDE |
AnnounceDate | 2022-05-31 |
AnnouncementXML | Submission_2022-05-31_02:06:41.303.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Peter Thuy-Boun |
SpeciesList | scientific name: Amblyomma americanum; NCBI TaxID: 6943; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2022-05-12 09:52:03 | ID requested | |
⏵ 1 | 2022-05-31 02:06:41 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: tick, amblyomma americanum |
Contact List
Seemay Chou |
contact affiliation | Arcadia Science |
contact email | seemay.chou@arcadiascience.com |
lab head | |
Peter Thuy-Boun |
contact affiliation | Arcadia Science |
contact email | peter.thuy-boun@arcadiascience.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD033870 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD033870
- Label: PRIDE project
- Name: Proteomic and long-read transcriptomic analysis of Amblyomma americanum salivary gland lysate