PXD031213

PXD031213 is an original dataset announced via ProteomeXchange.

Title	Transcriptome innovations in primates revealed by single-molecule long-read sequencing
Description	We produced an extensive transcript catalog for LCLs of 5 primate species by leveraging isoform sequencing and short-read RNA-seq. The curated transcriptomes were used to assist mass spectrometry protein identifications.
HostingRepository	PRIDE
AnnounceDate	2022-05-31
AnnouncementXML	Submission_2022-05-31_02:15:46.566.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Luis Ferrández
SpeciesList	scientific name: Pan troglodytes (Chimpanzee); NCBI TaxID: 9598; scientific name: Pongo pygmaeus (Bornean orangutan); NCBI TaxID: 9600; scientific name: Gorilla gorilla; NCBI TaxID: 9593; scientific name: Macaca mulatta (Rhesus macaque); NCBI TaxID: 9544; scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	TMT6plex-126 reporter+balance reagent acylated residue; monohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
Instrument	Orbitrap Fusion Lumos

Revision	Datetime	Status	ChangeLog Entry
0	2022-01-25 00:35:44	ID requested
⏵ 1	2022-05-31 02:15:46	announced

Dataset with its publication pending

submitter keyword: primates,LCLs,proteomics,isoforms,Iso-seq

Tomàs Marquès Bonet
contact affiliation	Comparative Genomics lab - Institute of Evolutionary Biology (IBE) Barcelona (Spain)
contact email	tomas.marques@upf.edu
lab head
Luis Ferrández
contact affiliation	IBE
contact email	luis.ferrandez@upf.edu
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/05/PXD031213

PRIDE project URI

• PRIDE
  1. PXD031213
     1. Label: PRIDE project
     2. Name: Transcriptome innovations in primates revealed by single-molecule long-read sequencing