PXD031188

PXD031188 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Phosphoproteome profile of Human Brain Hemisphere
Description	This project is a continuation of our previous study which resembles Interregional and Inter-hemisphere Proteome of the Human Brain. The current study aims to generate a multiregional phosphoproteome map of 12 neuroanatomical regions from both the hemisphere. The analysis of the raw data was done using MaxQuant and Perseus software. In addition to this phosphopeptides showing equal to and more than 0.75 localization probability and intensities inall the replicates were selected for further analysis. The hemisphere and region specificphosphoproteome expression has also been studied further to understand the functional aspect using in-silico tools. Finally, the data has also been integrated with the previously published proteomic expression in the brainprot (http://www.brainprot.org/) to drive the scientific community in neurobiology research.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_08:41:42.208.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Deeptarup Biswas
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	phosphorylated residue
Instrument	Orbitrap Fusion

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2022-01-24 02:43:17	ID requested
1	2023-03-11 03:14:38	announced
⏵ 2	2023-11-14 08:41:47	announced	2023-11-14: Updated project metadata.

Publication List

Biswas D, Kumari N, Lach, é, n-Montes M, Dutta S, Agrawal I, Samanta D, Shenoy SV, Halder A, Fern, á, ndez-Irigoyen J, Padhye AR, Santamar, í, a E, Srivastava S, Deep Phosphoproteome Landscape of Interhemispheric Functionality of Neuroanatomical Regions of the Human Brain. J Proteome Res, 22(4):1043-1055(2023) [pubmed]

Biswas D, Kumari N, Lach, é, n-Montes M, Dutta S, Agrawal I, Samanta D, Shenoy SV, Halder A, Fern, á, ndez-Irigoyen J, Padhye AR, Santamar, í, a E, Srivastava S, Deep Phosphoproteome Landscape of Interhemispheric Functionality of Neuroanatomical Regions of the Human Brain. J Proteome Res, 22(4):1043-1055(2023) [pubmed]

Keyword List

ProteomeXchange project tag: Human Brain Proteome Project (HUPO_HBPP) (B/D-HPP), Biology/Disease-Driven Human Proteome Project (B/D-HPP), Human Proteome Project
submitter keyword: Phosphoproteomics,Neuroproteomics, Brainprot, Brain Hemisphere

ProteomeXchange project tag: Human Brain Proteome Project (HUPO_HBPP) (B/D-HPP), Biology/Disease-Driven Human Proteome Project (B/D-HPP), Human Proteome Project

submitter keyword: Phosphoproteomics,Neuroproteomics, Brainprot, Brain Hemisphere

Contact List

Sanjeeva Srivastava
contact affiliation	Professor
contact email	sanjeeva@iitb.ac.in
lab head
Deeptarup Biswas
contact affiliation	Proteomics Lab, IIT Bombay
contact email	deeptarupbiswas@gmail.com
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD031188
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/03/PXD031188

PRIDE project URI

Repository Record List

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