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PXD030409 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleDevelopment of an experimental approach to achieve spatially resolved plant root-associated metaproteomics using an agar-plate system
DescriptionThis study demonstrated a novel peptide extraction method for plant agar-plate culture systems, which was previously unsuitable for (meta)proteomic measurements. Given the broad use of agar-plate culture systems in life sciences, this method will not only benefit other plant-microbe interface research but could be leveraged for other microbiology research in general.
ReviewLevelNon peer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterPaul Abraham
SpeciesList scientific name: Pantoea sp. YR343; NCBI TaxID: 1144341; scientific name: Streptomyces mirabilis; NCBI TaxID: 68239; scientific name: Bacillus sp. bc15; NCBI TaxID: 1761758; scientific name: Rhizobium sp. CF142; NCBI TaxID: 1144314; scientific name: Caulobacter sp. AP07; NCBI TaxID: 1144304; scientific name: Sphingobium sp. AP49; NCBI TaxID: 1144307; scientific name: Paraburkholderia sp.; NCBI TaxID: 1926495; scientific name: Variovorax sp. CF313; NCBI TaxID: 1144315; scientific name: uncultured Duganella sp.; NCBI TaxID: 206097; scientific name: Pseudomonas sp. GM17; NCBI TaxID: 1144323; scientific name: Populus trichocarpa; common name: black cottonwood; NCBI TaxID: 3694;
ModificationListOxidation; Carbamidomethyl
InstrumentQ Exactive Plus
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-12-14 11:25:39ID requested
12022-05-13 09:49:06announced
Publication List
no publication
Keyword List
submitter keyword: plant-associated microbes, rhizosphere, agar-plate system, synthetic community, reductionist approach, metaproteomics
Contact List
Paul E. Abraham
contact affiliationOak Ridge National Laboratory
contact emailabrahampe@ornl.gov
lab head
Paul Abraham
contact affiliationORNL
contact emailpav@ornl.gov
dataset submitter
Full Dataset Link List
MassIVE dataset URI
Dataset FTP location
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