PXD029284-3

PXD029284 is an original dataset announced via ProteomeXchange.

Title	Metaproteomic analysis of gut microbiota from 30 samples of cystic fibrosis infants
Description	The link between human gut microbiota (a complex group of microorganisms including not only bacteria but also fungi, viruses, etc.,) and the physiological state is nowadays unquestionable. Metaproteomic has emerged as a useful technique to characterize this microbial community, not just taxonomically, but also focusing on specific biological processes carried out by gut microbiota that may have an effect in the host health or pathological state. Cystic fibrosis is a genetic disease in which the microbiota of the respiratory tract determines the patient's survival and differences in composition of gut microbiota of cystic fibrosis patients respect to healthy infants have been reported. In order to characterize this host-microbiota inter-relation, we carried out the metaproteomic study of 30 stool samples from infants with cystic fibrosis.
HostingRepository	PRIDE
AnnounceDate	2023-11-14
AnnouncementXML	Submission_2023-11-14_09:05:20.198.xml
DigitalObjectIdentifier
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Unsupported dataset by repository
PrimarySubmitter	Concha Gil
SpeciesList	scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationList	No PTMs are included in the dataset
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2021-10-22 06:56:36	ID requested
1	2022-10-11 09:21:27	announced
2	2023-09-25 03:21:30	announced	2023-09-25: Updated project metadata.
⏵ 3	2023-11-14 09:05:21	announced	2023-11-14: Updated project metadata.

Saralegui C, Garc, í, a-Dur, á, n C, Romeu E, Hern, á, ez-S, á, nchez ML, Maruri A, Bast, ó, n-Paz N, Lamas A, Vicente S, P, é, rez-Ruiz E, Delgado I, Luna-Paredes C, Caballero JD, Zamora J, Monteoliva L, Gil C, Del Campo R, Statistical Evaluation of Metaproteomics and 16S rRNA Amplicon Sequencing Techniques for Study of Gut Microbiota Establishment in Infants with Cystic Fibrosis. Microbiol Spectr, 10(6):e0146622(2022) [pubmed]

submitter keyword: microbial functions, cystic fibrosis,Metaproteomics, human proteins, gut microbiota

Concha Gil
contact affiliation	Departamento de Microbiología II, Facultad de Farmacia, Universidad Complutense de Madrid, Madrid, Spain
contact email	conchagil@ucm.es
lab head
Concha Gil
contact affiliation	UCM
contact email	cai.proteomica@pas.ucm.es
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/10/PXD029284

PRIDE project URI

• PRIDE
  1. PXD029284
     1. Label: PRIDE project
     2. Name: Metaproteomic analysis of gut microbiota from 30 samples of cystic fibrosis infants