PXD029198 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Improving the proteome coverage of Daphnia magna |
Description | To improve proteome coverage in Daphnia, we established an easy-to-use procedure based on the LC-MS/MS of whole daphnids and dissected daphnia guts separately. Using a comprehensive spectral library, generated by gas-phase fractionation (GPF) and a data-independent acquisition method, we identified in total > 6000 proteins, demonstrating the effectiveness of our approach. |
HostingRepository | PRIDE |
AnnounceDate | 2022-11-17 |
AnnouncementXML | Submission_2022-11-17_07:54:01.177.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | ThomasFröhlich |
SpeciesList | scientific name: Sus scrofa domesticus (domestic pig); NCBI TaxID: 9825; scientific name: Daphnia magna; NCBI TaxID: 35525; |
ModificationList | iodoacetamide derivatized residue |
Instrument | Q Exactive HF |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-10-18 04:50:42 | ID requested | |
⏵ 1 | 2022-11-17 07:54:01 | announced | |
2 | 2023-11-14 07:53:32 | announced | 2023-11-14: Updated project metadata. |
Publication List
Wilde MV, Brehm J, Schwarzer M, St, ö, ckl JB, Laforsch C, Fr, ö, hlich T, Improving the proteome coverage of Daphnia magna - implications for future ecotoxicoproteomics studies. Proteomics, 22(10):e2100289(2022) [pubmed] |
Keyword List
submitter keyword: DIA, mass spectrometry,gut,Aquatic pollution, ecotoxicoproteomics, Daphnia |
Contact List
ThomasFröhlich |
contact affiliation | Ludwig-Maximilians-Universität München Genzentrum Laboratory for Functional Genome Analysis Feodor-Lynen-Str. 25 D-81377 München |
contact email | frohlich@genzentrum.lmu.de |
lab head | |
ThomasFröhlich |
contact affiliation | Laboratory for Functional Genome Analysis Gene Center Munich Ludwig-Maximilians-Universität Munich (LMU) Feodor-Lynen-Str. 25 81377 Munich Germany |
contact email | frohlich@genzentrum.lmu.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/11/PXD029198 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD029198
- Label: PRIDE project
- Name: Improving the proteome coverage of Daphnia magna