PXD026377 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Proteomic profiling of Labeo Rohita; a widely cultivated fish |
Description | The aim of this study was to develop a Peptide Atlas repository for Labeo rohita. Using LC-MS/MS, we have performed in-depth proteomics analysis of 19 different sample types, including 17 tissue samples, plasma from female fish and embryo 4-day post fertilization. Whole analysis resulted in the identification of more than 6015 confident canonical proteins along with ~3000 non canonical peoteins corresponding to more than 150 thousands peptides. This proteomic dataset would complement the recently published genome to accelerate further research. |
HostingRepository | PRIDE |
AnnounceDate | 2022-01-10 |
AnnouncementXML | Submission_2022-01-10_10:05:06.442.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Mehar Un Nissa |
SpeciesList | scientific name: Labeo rohita; NCBI TaxID: 84645; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Fusion |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-05-31 07:11:12 | ID requested | |
1 | 2022-01-10 09:05:14 | announced | |
⏵ 2 | 2022-01-10 10:05:07 | announced | 2022-01-10: Updated publication reference for PubMed record(s): 34962809. |
Publication List
Nissa MU, Pinto N, Mukherjee A, Reddy PJ, Ghosh B, Sun Z, Ghantasala S, Chetanya C, Shenoy SV, Moritz RL, Goswami M, Srivastava S, . J Proteome Res, 21(2):420-437(2022) [pubmed] |
Keyword List
submitter keyword: Labeo rohita, Orbitrap fusion, rohu peptideAtlas |
Contact List
Sanjeeva Srivastava |
contact affiliation | Department of biosciences and Bioengineering, IIT Bombay |
contact email | Sanjeeva@iitb.ac.in |
lab head | |
Mehar Un Nissa |
contact affiliation | Indian Institute of Technology Bombay |
contact email | kohlimeharunnissa@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2022/01/PXD026377 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD026377
- Label: PRIDE project
- Name: Proteomic profiling of Labeo Rohita; a widely cultivated fish