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PXD026377

PXD026377 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleProteomic profiling of Labeo Rohita; a widely cultivated fish
DescriptionThe aim of this study was to develop a Peptide Atlas repository for Labeo rohita. Using LC-MS/MS, we have performed in-depth proteomics analysis of 19 different sample types, including 17 tissue samples, plasma from female fish and embryo 4-day post fertilization. Whole analysis resulted in the identification of more than 6015 confident canonical proteins along with ~3000 non canonical peoteins corresponding to more than 150 thousands peptides. This proteomic dataset would complement the recently published genome to accelerate further research.
HostingRepositoryPRIDE
AnnounceDate2022-01-10
AnnouncementXMLSubmission_2022-01-10_10:05:06.442.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterMehar Un Nissa
SpeciesList scientific name: Labeo rohita; NCBI TaxID: 84645;
ModificationListNo PTMs are included in the dataset
InstrumentOrbitrap Fusion
Dataset History
RevisionDatetimeStatusChangeLog Entry
02021-05-31 07:11:12ID requested
12022-01-10 09:05:14announced
22022-01-10 10:05:07announced2022-01-10: Updated publication reference for PubMed record(s): 34962809.
Publication List
Nissa MU, Pinto N, Mukherjee A, Reddy PJ, Ghosh B, Sun Z, Ghantasala S, Chetanya C, Shenoy SV, Moritz RL, Goswami M, Srivastava S, . J Proteome Res, 21(2):420-437(2022) [pubmed]
Keyword List
submitter keyword: Labeo rohita, Orbitrap fusion, rohu peptideAtlas
Contact List
Sanjeeva Srivastava
contact affiliationDepartment of biosciences and Bioengineering, IIT Bombay
contact emailSanjeeva@iitb.ac.in
lab head
Mehar Un Nissa
contact affiliationIndian Institute of Technology Bombay
contact emailkohlimeharunnissa@gmail.com
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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