PXD025792 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Benchmark data set for MSPypeline, a python package for streamlined mass spectrometry-based proteomics data analysis |
Description | Mass spectrometry-based proteomics is increasingly employed in biology and medicine. To generate reliable information from large data sets and ensure comparability of results it is crucial to implement and standardize the quality control of the raw data, the data processing steps and the statistical analyses. The MSPypeline provides a platform for the import of MaxQuant output tables, the generation of quality control reports, the preprocessing of data including normalization and exploratory analyses by statistical inference plots. These standardized steps assess data quality, provide customizable figures and enable the identification of differentially expressed proteins to reach biologically relevant conclusions. |
HostingRepository | PRIDE |
AnnounceDate | 2021-07-22 |
AnnouncementXML | Submission_2021-07-22_01:51:54.992.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Alexander Held |
SpeciesList | scientific name: Homo sapiens (Human); NCBI TaxID: 9606; |
ModificationList | No PTMs are included in the dataset |
Instrument | Orbitrap Exploris 480 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2021-05-04 07:08:59 | ID requested | |
⏵ 1 | 2021-07-22 01:51:55 | announced | |
2 | 2023-11-14 08:53:07 | announced | 2023-11-14: Updated project metadata. |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: human, H838, H1975, NSCLC, TGFbeta, Orbitrap Exploris 480 |
Contact List
Ursula Klingmüller |
contact affiliation | Division Systems Biology of Signal Transduction, German Cancer Research Center (DKFZ), Heidelberg, 69120, Germany |
contact email | u.klingmueller@dkfz.de |
lab head | |
Alexander Held |
contact affiliation | DKFZ Heidelberg |
contact email | a.gorol@dkfz.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/07/PXD025792 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD025792
- Label: PRIDE project
- Name: Benchmark data set for MSPypeline, a python package for streamlined mass spectrometry-based proteomics data analysis