PXD023901-1
PXD023901 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | A proteomics data analysis protocol using Open-pFind |
| Description | High-throughput proteomics based on mass spectrometry (MS) analysis has permeated biomedical science and propelled numerous research projects. pFind 3 is a database search engine for high-speed and in-depth proteomics data analysis (Chi et al. 2018). pFind 3 features a swift open search workflow that is adept at uncovering less obvious information such as unexpected modifications or mutations that would have gone unnoticed using a conventional data analysis pipeline. In this protocol, we provide step-by-step instructions to help users mastering various types of data analysis using pFind 3 in conjunction with pParse for data preprocessing and if needed, pQuant for quantitation. This streamlined pParse-pFind-pQuant workflow offers exceptional sensitivity, precision, and speed. It can be easily implemented in any laboratory in need of identifying peptides, proteins, or post-translational modifications, or of quantitation based on 15N-labeling, SILAC-labeling, or TMT/iTRAQ labeling. |
| HostingRepository | iProX |
| AnnounceDate | 2021-01-31 |
| AnnouncementXML | Submission_2021-01-31_21:18:21.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Unsupported dataset by repository |
| PrimarySubmitter | Guangcan Shao |
| SpeciesList | scientific name: Homo sapiens; NCBI TaxID: 9606; scientific name: Caenorhabditis elegans; NCBI TaxID: 6239; |
| ModificationList | No PTMs are included in the dataset |
| Instrument | Q Exactive HF; Q Exactive |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2021-01-31 21:17:38 | ID requested | |
| ⏵ 1 | 2021-01-31 21:18:21 | announced | |
| 2 | 2023-06-11 20:13:55 | announced | 2023-06-12: Update publication information. |
Publication List
| Dataset with its publication pending |
Keyword List
| submitter keyword: Open-pFind, protein identification, protein quantitation |
Contact List
| Meng-Qiu Dong | |
|---|---|
| contact affiliation | National Institute of Biological Sciences |
| contact email | dongmengqiu@nibs.ac.cn |
| lab head | |
| Guangcan Shao | |
| contact affiliation | National Institute of Biological Sciences |
| contact email | shaoguangcan@nibs.ac.cn |
| dataset submitter | |
Full Dataset Link List
| iProX dataset URI |
to receive all new ProteomeXchange dataset release announcements!
