<<< Full experiment listing

PXD023209-1

PXD023209 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleComprehensive analysis of the host-virus interactome of SARS-CoV-2
DescriptionHost-virus protein-protein interaction is the key component of SARS-CoV-2 life cycle, which can be targeted for therapeutic intervention. Thus, we conducted a comprehensive interactome study between the virus and host cell using tandem affinity purification (TAP) and BioID2 labeling strategies. In addition, we compared the interactomes of two key SARS-CoV-2 encoded viral proteins, NSP1 and N protein, to the interactomes of their counterparts in other human coronaviruses.
HostingRepositoryPRIDE
AnnounceDate2021-06-29
AnnouncementXMLSubmission_2021-06-29_08:25:47.451.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterZhen Chen
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListNo PTMs are included in the dataset
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02020-12-18 01:47:56ID requested
12021-06-29 08:25:47announced
Publication List
Dataset with its publication pending
Keyword List
ProteomeXchange project tag: Covid-19
submitter keyword: SARS-CoV-2, interactome, host-virus protein-protein interaction, human coronavirus, SFB-TAP, BioID2
Contact List
Junjie Chen
contact affiliationDepartment of Experimental Radiation Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA
contact emailjchen8@mdanderson.org
lab head
Zhen Chen
contact affiliationThe University of Texas MD Anderson Cancer Center
contact emailzchen6@mdanderson.org
dataset submitter
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/06/PXD023209
PRIDE project URI
Repository Record List
[ + ]