PXD022995 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Ross Sea Surface Water Metaproteomics |
Description | We sampled the microbial community at the sea ice edge in McMurdo Sound, Ross Sea at the same location (-77.62S, 165.41E) for four weeks (as described in Wu et al 2019, Nat. Comms.). We had four sampling dates corresponding to weeks 1 to 4: December 28 2014, January 6, 15, and 22 2015. Large volumes of water (150--250 L) were filtered from 1 m depth at the sea ice edge, and passed through three filters sequentially (3.0, 0.8, and 0.1 um, each 293 mm Supor filters). Filters with collected biomass were then placed in tubes with a sucrose-based preservative buffer (20 mM EDTA, 400 mM NaCl, 0.75 M sucrose, 50 mM Tris-HCl, pH 8.0) and stored at -80 C until sample processing. We extracted proteins after buffer exchange into a 3\% SDS solution as previously described Wu et al 2019, Nat. Comms. |
HostingRepository | PRIDE |
AnnounceDate | 2021-09-07 |
AnnouncementXML | Submission_2021-09-07_04:09:20.560.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Scott McCain |
SpeciesList | scientific name: marine plankton environmental sample; NCBI TaxID: 632957; |
ModificationList | No PTMs are included in the dataset |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-12-08 06:43:19 | ID requested | |
⏵ 1 | 2021-09-07 04:09:21 | announced | |
Publication List
McCain JSP, Tagliabue A, Susko E, Achterberg EP, Allen AE, Bertrand EM, Cellular costs underpin micronutrient limitation in phytoplankton. Sci Adv, 7(32):(2021) [pubmed] |
Keyword List
submitter keyword: phytoplankton |
Contact List
Erin M. Bertrand |
contact affiliation | Department of Biology, Dalhousie University, Halifax, Nova Scotia, Canada |
contact email | erin.bertrand@dal.ca |
lab head | |
Scott McCain |
contact affiliation | Dalhousie University |
contact email | j.scott.mccain@dal.ca |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD022995 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD022995
- Label: PRIDE project
- Name: Ross Sea Surface Water Metaproteomics