PXD022796
PXD022796 is an original dataset announced via ProteomeXchange.
Dataset Summary
| Title | Towards predicting the fate of reef corals |
| Description | An iTRAQ approach was used to characterize the proteomes of reef corals (Orbicella faveolata) and their dinoflagellate endosymbionts (family Symbiodiniaceae) from a short-term (one month) thermal stress experiment. Please note that the same protein sample was labeled with the 113 tag and run in each batch (A, B, and C in the file names) to serve as an internal control aimed at limiting bias associated with batch-to-batch variation. As such, although 24 samples were analyzed (8-plex iTRAQ was used), only 21 of these reflect actual experimental coral samples. Please see the attached Word and Excel files to match the batch and tag with the experimental samples. Note that one sample (B5-7; iTRAQ batch A-label 114; a control coral sampled after five treatment days) spilled in the speed-vac during preparation and so was not analyzed, resulting in a final sample size of 20. |
| HostingRepository | MassIVE |
| AnnounceDate | 2021-09-28 |
| AnnouncementXML | Submission_2021-09-28_08:53:17.197.xml |
| DigitalObjectIdentifier | |
| ReviewLevel | Non peer-reviewed dataset |
| DatasetOrigin | Original dataset |
| RepositorySupport | Supported dataset by repository |
| PrimarySubmitter | Anderson B Mayfield |
| SpeciesList | scientific name: Orbicella faveolata; NCBI TaxID: 48498; scientific name: Breviolum sp.; NCBI TaxID: 2499526; scientific name: Durusdinium sp. clade D; NCBI TaxID: 298137; |
| ModificationList | iTRAQ8plex |
| Instrument | Q Exactive |
Dataset History
| Revision | Datetime | Status | ChangeLog Entry |
|---|---|---|---|
| 0 | 2020-11-27 07:54:15 | ID requested | |
| ⏵ 1 | 2021-09-28 08:53:17 | announced |
Publication List
| no publication |
Keyword List
| submitter keyword: coral reefs, climate change, dinoflagellate, proteomics, predictive modeling |
Contact List
| Anderson Mayfield | |
|---|---|
| contact affiliation | University of Miami |
| contact email | abm64@miami.edu |
| lab head | |
| Anderson B Mayfield | |
| contact affiliation | NOAA |
| contact email | anderson.mayfield@noaa.gov |
| dataset submitter | |
Full Dataset Link List
| MassIVE dataset URI |
| Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://massive.ucsd.edu/MSV000086530/ |
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