PXD021845-1
PXD021845 is an original dataset announced via ProteomeXchange.
Dataset Summary
Title | Validation of detected viral and host peptides from COVID-19 nasopharyngeal swab samples |
Description | In the current scenario of COVID-19, an assay that can efficiently and specifically detect infection by SARS-COV2 is required. Nasopharyngeal swabs are non-invasive samples and can be conveniently acquired from the population to be screened. In this work, we have validated a few viral and host peptides (found to be relevant from our shotgun data) using a Triple Quadrupole mass spectrometer. |
HostingRepository | PanoramaPublic |
AnnounceDate | 2021-04-02 |
AnnouncementXML | Submission_2021-04-02_14:48:37.750.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | supported by repository but incomplete data and/or metadata |
PrimarySubmitter | Sanjeeva Srivastava |
SpeciesList | scientific name: Severe acute respiratory syndrome coronavirus 2; NCBI TaxID: 2697049; scientific name: Homo sapiens; NCBI TaxID: 9606; |
ModificationList | Carbamidomethyl; Label:13C(6)15N(2); Label:13C(6)15N(4) |
Instrument | TSQ Altis |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
---|---|---|---|
0 | 2020-10-05 09:30:05 | ID requested | |
⏵ 1 | 2021-04-02 14:48:39 | announced |
Publication List
Bankar R, Suvarna K, Ghantasala S, Banerjee A, Biswas D, Choudhury M, Palanivel V, Salkar A, Verma A, Singh A, Mukherjee A, Pai MGJ, Roy J, Srivastava A, Badaya A, Agrawal S, Shrivastav O, Shastri J, Srivastava S, Proteomic investigation reveals dominant alterations of neutrophil degranulation and mRNA translation pathways in patients with COVID-19. iScience, 24(3):102135(2021) [pubmed] |
Keyword List
submitter keyword: COVID, Nasopharyngeal swabs, MRM, SARS-COV-2, host |
Contact List
Sanjeeva Srivastava | |
---|---|
contact affiliation | IIT BOMBAY |
contact email | sanjeeva@iitb.ac.in |
lab head | |
Sanjeeva Srivastava | |
contact affiliation | IIT BOMBAY |
contact email | sanjeeva@iitb.ac.in |
dataset submitter |
Full Dataset Link List
Panorama Public dataset URI |