PXD020638 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Combining label-free and label-based accurate quantifications with SWATH-MS: comparison with SRM and PRM for the evaluation of bovine muscle type effects |
Description | The performances of label-based SWATH-MS, SRM and PRM to accurately quantify ten candidate biomarkers of beef meat tenderness or marbling, in a cohort of 64 bovine muscle tissues expected to cover a wide biological range of these traits, were evaluated. Limits of quantification, dynamic range and quantification performances were assessed. Moreover, protein amounts for all proteins detected in SWATH-MS were estimated in a label-free manner. |
HostingRepository | PRIDE |
AnnounceDate | 2021-06-09 |
AnnouncementXML | Submission_2021-06-08_22:26:19.372.xml |
DigitalObjectIdentifier | https://dx.doi.org/10.6019/PXD020638 |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Supported dataset by repository |
PrimarySubmitter | Joanna Bons |
SpeciesList | scientific name: Bos taurus (Bovine); NCBI TaxID: 9913; |
ModificationList | No PTMs are included in the dataset |
Instrument | TripleTOF 6600 |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-07-29 06:25:31 | ID requested | |
⏵ 1 | 2021-06-08 22:26:19 | announced | |
2 | 2021-06-08 22:40:50 | announced | 2021-06-09: Updated project metadata. |
Publication List
Keyword List
submitter keyword: Beef meat quality |
Data-Independent Acquisition (DIA) |
Quantitative MS |
SWATH-MS |
Targeted proteomics |
Contact List
Christine Carapito |
contact affiliation | Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), University of Strasbourg, CNRS, IPHC, UMR 7178, F-67000 Strasbourg, France |
contact email | ccarapito@unistra.fr |
lab head | |
Joanna Bons |
contact affiliation | LSMBO - IPHC |
contact email | joanna.bons@etu.unistra.fr |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/06/PXD020638 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD020638
- Label: PRIDE project
- Name: Combining label-free and label-based accurate quantifications with SWATH-MS: comparison with SRM and PRM for the evaluation of bovine muscle type effects