PXD020638

PXD020638 is an original dataset announced via ProteomeXchange.

Dataset Summary

Title	Combining label-free and label-based accurate quantifications with SWATH-MS: comparison with SRM and PRM for the evaluation of bovine muscle type effects
Description	The performances of label-based SWATH-MS, SRM and PRM to accurately quantify ten candidate biomarkers of beef meat tenderness or marbling, in a cohort of 64 bovine muscle tissues expected to cover a wide biological range of these traits, were evaluated. Limits of quantification, dynamic range and quantification performances were assessed. Moreover, protein amounts for all proteins detected in SWATH-MS were estimated in a label-free manner.
HostingRepository	PRIDE
AnnounceDate	2021-06-09
AnnouncementXML	Submission_2021-06-08_22:40:49.369.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD020638
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Joanna Bons
SpeciesList	scientific name: Bos taurus (Bovine); NCBI TaxID: 9913;
ModificationList	No PTMs are included in the dataset
Instrument	TripleTOF 6600

Dataset History

Revision	Datetime	Status	ChangeLog Entry
0	2020-07-29 06:25:31	ID requested
1	2021-06-08 22:26:19	announced
⏵ 2	2021-06-08 22:40:50	announced	2021-06-09: Updated project metadata.

Publication List

10.1002/PMIC.202000214;
Bons J, Husson G, Chion M, Bonnet M, Maumy-Bertrand M, Delalande F, Cianf, é, rani S, Bertrand F, Picard B, Carapito C, Combining label-free and label-based accurate quantifications with SWATH-MS: Comparison with SRM and PRM for the evaluation of bovine muscle type effects. Proteomics, 21(10):e2000214(2021) [pubmed]

10.1002/PMIC.202000214;

Bons J, Husson G, Chion M, Bonnet M, Maumy-Bertrand M, Delalande F, Cianf, é, rani S, Bertrand F, Picard B, Carapito C, Combining label-free and label-based accurate quantifications with SWATH-MS: Comparison with SRM and PRM for the evaluation of bovine muscle type effects. Proteomics, 21(10):e2000214(2021) [pubmed]

Keyword List

submitter keyword: Beef meat quality
Data-Independent Acquisition (DIA)
Quantitative MS
SWATH-MS
Targeted proteomics

submitter keyword: Beef meat quality

Data-Independent Acquisition (DIA)

Quantitative MS

SWATH-MS

Targeted proteomics

Contact List

Christine Carapito
contact affiliation	Laboratoire de Spectrométrie de Masse BioOrganique (LSMBO), University of Strasbourg, CNRS, IPHC, UMR 7178, F-67000 Strasbourg, France
contact email	ccarapito@unistra.fr
lab head
Joanna Bons
contact affiliation	LSMBO - IPHC
contact email	joanna.bons@etu.unistra.fr
dataset submitter

Full Dataset Link List

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/06/PXD020638
PRIDE project URI

Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/06/PXD020638

PRIDE project URI

Repository Record List

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