PXD020103 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Comparative proteomics analysis of Polynucleobacter asymbioticus |
Description | Comparative proteomics analysis to evaluate the influence of varying culture conditions on a planktonic freshwater dwelling bacterium, Polynucleobacter asymbioticus that belongs to the class Gammaproteobacteria. In the present study, a type strain Polynucleobacter asymbioticus strain QLW-P1DMWA-1T (= DSM 18221 = CIP 10981) was cultured in triplicates in sterile UV-permeable polyethylene bags (~35% permeability; Whirl-Pak®, Nasco). Culturing was carried out at 4°C, 26°C and 26° C plus 30 minutes of ultraviolet radiation exposure two times a day using 100W ARIMED® B UV lamps (Cosmedico®, Germany). We have applied mass spectrometry based large-scale screening of proteins to investigate to better understanding of the survival nature of this microbe. |
HostingRepository | PRIDE |
AnnounceDate | 2020-09-09 |
AnnouncementXML | Submission_2020-09-08_23:46:27.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Jayaseelan Murugaiyan |
SpeciesList | scientific name: Polynucleobacter asymbioticus; NCBI TaxID: 576611; scientific name: Polynucleobacter asymbioticus QLW-P1DMWA-1; NCBI TaxID: 312153; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | LTQ Orbitrap Velos |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-06-29 07:32:19 | ID requested | |
⏵ 1 | 2020-09-08 23:46:28 | announced | |
Publication List
Dataset with its publication pending |
Keyword List
submitter keyword: Polynucleobacter asymbioticus |
Gram-negative |
aerobic |
freshwater habitats |
proteomics |
LTQ Orbitrap Velos mass spectrometer |
maxquant |
Perseus software |
Contact List
Jayaseelan Murugaiyan |
contact affiliation | Institute of Animal Hygiene and Environmental Health, Centre for Infectious Medicine, Free University of Berlin, Robert-von-Ostertag-Str. 7-13, Berlin 14163, Germany. Jayaseelan.murugaiyan@fu-berlin.de, Department of Biotechnology, SRM University AP, Andhra Pradesh, Neerukonda, Mangalagiri, Andhra Pradesh 522 502, India. jayaseelan.m@srmap.edu.in |
contact email | jayaseelan.murugaiyan@fu-berlin.de |
lab head | |
Jayaseelan Murugaiyan |
contact affiliation | Freie Universitaet-Berlin,Institute of Animal Hygiene and Environmental Health |
contact email | jayaseelan.murugaiyan@fu-berlin.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
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PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD020103
- Label: PRIDE project
- Name: Comparative proteomics analysis of Polynucleobacter asymbioticus