PXD018448 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | Structure and function of the topsoil metaproteome across global biomes: a survey of the topsoil metaproteome across global biomes |
Description | Herein, we evaluated the changes in biological functions in soils across global biomes through the identification and quantification of proteins. This knowledge is essential to provide one stepforward in soil microbial ecology in order to decipher the cellular and molecular mechanisms employed by soil microbial communities to adapt to their environment and to explain the potential responses of microbial communities, and their microbially-driven ecosystem services, to global change and land use. Our study aims to provide the most comprehensive assessment on the structure and function of the topsoil metaproteome across global biomes, and hence provide direct identification of the most domimant protein-encoded functions in terrestrial ecosystems. |
HostingRepository | PRIDE |
AnnounceDate | 2023-02-24 |
AnnouncementXML | Submission_2023-02-24_02:16:21.456.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | NicoJehmlich |
SpeciesList | scientific name: Escherichia coli; NCBI TaxID: 562; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-04-09 04:20:22 | ID requested | |
⏵ 1 | 2023-02-24 02:16:22 | announced | |
2 | 2023-11-14 08:26:19 | announced | 2023-11-14: Updated project metadata. |
Publication List
Fernandes MLP, Bastida F, Jehmlich N, Martinovi, ć T, V, ě, trovsk, ý T, Baldrian P, Delgado-Baquerizo M, Starke R, Functional soil mycobiome across ecosystems. J Proteomics, 252():104428(2022) [pubmed] |
Keyword List
submitter keyword: survey,Soil metaproteomics, LC-MS, topsoil, global microbiomes |
Contact List
NicoJehmlich |
contact affiliation | Helmholtz Centre for Environmental Research GmbH - UFZ Department of Molecular Systems Biology Permoserstraße 15 04318 Leipzig, Germany |
contact email | nico.jehmlich@ufz.de |
lab head | |
NicoJehmlich |
contact affiliation | Helmholtz-Centre for Environmental Research - UFZ |
contact email | nico.jehmlich@ufz.de |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2023/02/PXD018448 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD018448
- Label: PRIDE project
- Name: Structure and function of the topsoil metaproteome across global biomes: a survey of the topsoil metaproteome across global biomes