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PXD017542-1

PXD017542 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleProduction and application of recombinant extracellular vesicles for method development, data normalization and assessment of pre-analytical variables
DescriptionThe diagnostic and therapeutic use of extracellular vesicles (EV) is under intense investigation and may lead to societal benefits. Reference materials are an invaluable resource for developing, improving and assessing the performance of regulated EV applications and for quantitative and objective data interpretation. We have engineered recombinant extracellular vesicles (rEV) as a biological reference material. rEV have similar biochemical and biophysical characteristics as sample EV and function as an internal quantitative and qualitative control throughout analysis. Spike-in applications of rEV in bodily fluids prior to EV analysis map technical variability of EV applications and promote intra and inter laboratory studies. This protocol describes the production, recovery and quality assurance of rEV, their dilution and addition to bodily fluids, and the detection steps based on fluorescence-, nucleic acid- and protein measurements. Multiple application potentials for rEV are exemplified, including method development, big data normalization and assessment of pre-analytical variables. The protocol can be adopted by researchers with standard laboratory and basic EV separation/characterization experience and requires ~4–5 d.
HostingRepositoryPRIDE
AnnounceDate2023-03-13
AnnouncementXMLSubmission_2023-03-13_00:11:47.391.xml
DigitalObjectIdentifier
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterPekkaRappu
SpeciesList scientific name: Homo sapiens (Human); NCBI TaxID: 9606;
ModificationListmonohydroxylated residue; acetylated residue; iodoacetamide derivatized residue
InstrumentQ Exactive HF
Dataset History
RevisionDatetimeStatusChangeLog Entry
02020-02-17 03:05:32ID requested
12023-03-13 00:11:47announced
22023-11-14 08:50:53announced2023-11-14: Updated project metadata.
Publication List
Keyword List
submitter keyword: recombinant, urine,extracellular vesicles, human, plasma
Contact List
Olivier DeWever
contact affiliationLaboratory of Experimental Cancer Research, Department of Human Structure and Repair, Ghent University, Ghent, Belgium
contact emailOlivier.DeWever@UGent.be
lab head
PekkaRappu
contact affiliationUniversity of Turku
contact emailpekka.rappu@utu.fi
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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