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PXD017367-1

PXD017367 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSoybean under smoke and flooding
DescriptionSoybean is an important crop with abundant protein, vegetable oil, and several phytochemicals. Meanwhile, plant-derived smoke plays a key role in plant growth. To investigate the effect of plant-derived smoke on the growth of soybean, a gel-free/label-free proteomic technique was used. The length of root including hypocotyl increased in soybean treated with 2000 ppm plant-derived smoke within 4 days. On treatment with plant-derived smoke, ribosome-related proteins increased and proteasome-related proteins decreased in roots including hypocotyl. Because arginase increased and arginosuccinate synthase/glutamine synthase decreased, the relationship between plant-derived smoke and arginine metabolism was confirmed. Metabolites related to amino acids, carboxylic acids, and sugars were mostly altered with the treatment of smoke. Amino acids related to lipid synthesis and protein phosphorylation increased; while those related to arginine metabolism intensively changed in smoke-treated soybean. In addition, nitric oxide significantly increased as well. On the other hand, under flooding stress, plant-derived smoke induced sacrifice-for-survival-mechanism-driven degradation of root tip in soybean, which promoted lateral root development during soybean recovery after flooding. These results suggest that plant-derived smoke improves early stage of growth in soybean with the balance of arginine synthesis/degradation and regulates soybean tolerance towards flooding.
HostingRepositoryjPOST
AnnounceDate2021-02-04
AnnouncementXMLSubmission_2021-02-03_07:00:05.xml
DigitalObjectIdentifier
ReviewLevelNon peer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportUnsupported dataset by repository
PrimarySubmitterSetsuko Komatsu
SpeciesList scientific name: cellular organisms; NCBI TaxID: 131567;
ModificationListS-carboxamidomethyl-L-cysteine; L-methionine sulfoxide
InstrumentLTQ Orbitrap
Dataset History
RevisionDatetimeStatusChangeLog Entry
02020-02-03 21:23:00ID requested
12021-02-03 07:00:05announced
22021-02-08 22:47:07announced2021-02-08: Updated FTP location.
32022-09-18 04:03:45announced2022-09-18: Updated FTP location.
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: soybean, smoke, flooding
Contact List
Setsuko Komatsu
lab head
Setsuko Komatsu
contact affiliationFukui University of Technology
dataset submitter
Full Dataset Link List
jPOST dataset URI
Dataset FTP location
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