PXD017250 is an
original dataset announced via ProteomeXchange.
Dataset Summary
Title | A TMT-based quantitative proteome analysis to elucidate the TSWV induced signaling cascade in susceptible and resistant cultivars of Solanum lycopersicum |
Description | Tomato spotted wilt virus (TSWV), transmitted by small insects known as thrips, is one of the major threats to tomato productivity across the globe. In addition to tomato, this virus infects more than 1000 other plants belonging to 85 families and is a cause of serious concern. Very little, however, is known about the molecular mechanim of TSWV induced signaling in plants. Here, we used a TMT-based quantitative proteome analysis to investigate the protein profiles of tomato leaves of two cultivars (cv 2621and 2689; susceptible and resistant respectively to TSWV infection) following TSWV inoculation. This approach resulted in the identification of 5112 proteins of which 1022 showed significant changes in response to TSWV. While the proteome of resistant cultivar majorly remain unaltered, proteome of susceptible cultivar showed distint differences following TSWV infection. TSWV modulated proteins in tomato included those with functions previously implicated in plant defence incuding secondary metabolism, ROS detoxification, MAP kinase signaling, Calcium signaling and jasmonate biosynthesis, among others. Taken together, these results provide new insights into the TSWV induced signaling in tomato leaves and may be useful in future to manage this deadly disease of plants. |
HostingRepository | PRIDE |
AnnounceDate | 2020-05-06 |
AnnouncementXML | Submission_2020-05-06_06:20:51.xml |
DigitalObjectIdentifier | |
ReviewLevel | Peer-reviewed dataset |
DatasetOrigin | Original dataset |
RepositorySupport | Unsupported dataset by repository |
PrimarySubmitter | Sun Tae Kim |
SpeciesList | scientific name: Solanum lycopersicum; NCBI TaxID: 4081; |
ModificationList | monohydroxylated residue; iodoacetamide derivatized residue |
Instrument | Q Exactive |
Dataset History
Revision | Datetime | Status | ChangeLog Entry |
0 | 2020-01-22 03:24:51 | ID requested | |
⏵ 1 | 2020-05-06 06:20:53 | announced | |
Publication List
Gupta R, Min CW, Kim SW, Yoo JS, Moon AR, Shin AY, Kwon SY, Kim ST, . Plants (Basel), 9(3):(2020) [pubmed] |
Keyword List
submitter keyword: TSWV, Proteomics, Tomato, Plant-pathogen interaction, MAP kinase, Signaling, Tandem-mass tags (TMT) |
Contact List
Sun Tae Kim |
contact affiliation | Department of Plant Bioscience, Pusan National University, Miryang, 50463, South Korea |
contact email | stkim71@pusan.ac.kr |
lab head | |
Sun Tae Kim |
contact affiliation | Pusan National University |
contact email | stkim5505@gmail.com |
dataset submitter | |
Full Dataset Link List
Dataset FTP location
NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2020/05/PXD017250 |
PRIDE project URI |
Repository Record List
[ + ]
[ - ]
- PRIDE
- PXD017250
- Label: PRIDE project
- Name: A TMT-based quantitative proteome analysis to elucidate the TSWV induced signaling cascade in susceptible and resistant cultivars of Solanum lycopersicum