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PXD016377-1

PXD016377 is an original dataset announced via ProteomeXchange.

Dataset Summary
TitleSalmonella Typhimurium SL1344 proteogenomics
DescriptionWe describe how searching chimeric spectra with post-processing including MSĀ²PIP-derived features aids the identification of hypothetical and unannotated proteins. We apply our workflow to the well-characterized human bacterial pathogen Salmonella enterica serovar Typhimurium (S. Typhimurium) and validate novel protein-coding regions with by ribo-seq translation evidence. We further elaborate how riboproteogenomics is instrumental for reannotating ORFs and the discovery of novel ORFs across bacteria.
HostingRepositoryPRIDE
AnnounceDate2020-10-13
AnnouncementXMLSubmission_2020-10-13_00:27:14.xml
DigitalObjectIdentifierhttps://dx.doi.org/10.6019/PXD016377
ReviewLevelPeer-reviewed dataset
DatasetOriginOriginal dataset
RepositorySupportSupported dataset by repository
PrimarySubmitterPatrick Willems
SpeciesList scientific name: Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344; NCBI TaxID: 216597;
ModificationListOxidation
InstrumentQ Exactive
Dataset History
RevisionDatetimeStatusChangeLog Entry
02019-11-21 01:43:34ID requested
12020-10-13 00:27:14announced
Publication List
Dataset with its publication pending
Keyword List
submitter keyword: Salmonella Typhimurium SL1344, ribosome profiling, ribo-seq, proteogenomics, post-processing
Contact List
Petra Van Damme
contact affiliationFaculty of Sciences, Department of Biochemistry and microbiology, Ghent University, Belgium
contact emailPetra.VanDamme@UGent.be
lab head
Patrick Willems
contact affiliationPSB-VIB
contact emailpawil@psb.ugent.be
dataset submitter
Full Dataset Link List
Dataset FTP location
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PRIDE project URI
Repository Record List
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