PXD016248

PXD016248 is an original dataset announced via ProteomeXchange.

Title	Metaproteomics on the digestive tract from Gammarus fossarum, an environmentally relevant sentinel.
Description	Presentation of a new data treatment methodology for investigating the full range of biomasses and metabolic activities of the holobiont components from the digestive tract of Gammarus fossarum. Two tissues, intestine and hepatopancreatic caecum from individual animals were compared. Three animals have been analyzed in technical duplicates.
HostingRepository	PRIDE
AnnounceDate	2021-09-09
AnnouncementXML	Submission_2021-09-08_19:27:22.049.xml
DigitalObjectIdentifier	https://dx.doi.org/10.6019/PXD016248
ReviewLevel	Peer-reviewed dataset
DatasetOrigin	Original dataset
RepositorySupport	Supported dataset by repository
PrimarySubmitter	Jean ARMENGAUD
SpeciesList	scientific name: Gammarus fossarum; NCBI TaxID: 52638;
ModificationList	Oxidation; Carbamidomethyl
Instrument	Q Exactive HF

Revision	Datetime	Status	ChangeLog Entry
0	2019-11-12 04:19:27	ID requested
⏵ 1	2021-09-08 19:27:22	announced

Gouveia D, Pible O, Culotta K, Jouffret V, Geffard O, Chaumot A, Degli-Esposti D, Armengaud J, Combining proteogenomics and metaproteomics for deep taxonomic and functional characterization of microbiomes from a non-sequenced host. NPJ Biofilms Microbiomes, 6(1):23(2020) [pubmed]

submitter keyword: metaproteomics, proteogenomics, bioinformatics, non-model host, gut, amphipod, microbiome, bacteria, fungi

Jean Armengaud
contact affiliation	CEA-Marcoule, ProGénoMIX platform, DRF-Li2D, 30207 Bagnols-sur-Cèze, France
contact email	jean.armengaud@cea.fr
lab head
Jean ARMENGAUD
contact affiliation	Li2D
contact email	jean.armengaud@cea.fr
dataset submitter

Dataset FTP location NOTE: Most web browsers have now discontinued native support for FTP access within the browser window. But you can usually install another FTP app (we recommend FileZilla) and configure your browser to launch the external application when you click on this FTP link. Or otherwise, launch an app that supports FTP (like FileZilla) and use this address: ftp://ftp.pride.ebi.ac.uk/pride/data/archive/2021/09/PXD016248

PRIDE project URI

• PRIDE
  1. PXD016248
     1. Label: PRIDE project
     2. Name: Metaproteomics on the digestive tract from Gammarus fossarum, an environmentally relevant sentinel.